View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15455_low_2 (Length: 503)
Name: NF15455_low_2
Description: NF15455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15455_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 19 - 489
Target Start/End: Complemental strand, 4751319 - 4750848
Alignment:
| Q |
19 |
atattaccattgaaattaactcaactaaaatttccttaataatcgcacacaactctaaaacgaccattaaaatgagacggagggaggaattttatttgct |
118 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4751319 |
atattaccattgaaataaactcaactaaaatttccttaataatcgcacacaactctaaaacgaccattaaaatgagacggagggaggaattttatttgct |
4751220 |
T |
|
| Q |
119 |
cttaaacctaaaatttgatttgcatgtcataacaatgtttattttataatgttgttacgtttatgaccattcacacactttaatttaaataatttgtcct |
218 |
Q |
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||||| |||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4751219 |
cttaagcctaaaatttaatttgcatgtcataacaatttttattttataatgttattacgtttatgaccattcgcacactttaatttaaataatttgtcct |
4751120 |
T |
|
| Q |
219 |
ttaaactttcttggcaagcatggaacgtattcccttcctctctacttacaatatcatttacaaaataaagtgtttgtccctaaatataatatcatctata |
318 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4751119 |
ttaaactttcttggcaagcatagaacgtattcccttcctctctaattacaatatcatttacaaaataaagtgtttgtccctaaatataatatcatctata |
4751020 |
T |
|
| Q |
319 |
caaatgtgtattttgttgttttatt-gnnnnnnnnnccttcctttttctccttaacgtaatatttctttcacacgctctttgattggctatacacaaagt |
417 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4751019 |
taaatgtgtattttgttgttttattcttttttttttccttcctttttctccttaacgtaatatttctttcacacgctctttcattggctatacacaaagt |
4750920 |
T |
|
| Q |
418 |
tagaaatggtttcaaaatcaaactttaattttactactaaacttacactctaagaacaacaaccttaatatt |
489 |
Q |
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| T |
4750919 |
tagaaatggtttcaaaatcaaactttaattttactactaaacttacactctaagaacaacaaccttaatatt |
4750848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 343
Target Start/End: Complemental strand, 4744377 - 4744229
Alignment:
| Q |
190 |
cacacactttaatttaaataat-ttgtcctttaaactttcttggcaagcatggaacgtattcccttcctctctacttacaatatcatttacaaaataaag |
288 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| ||||| |||| ||||||| ||| ||||||| ||| |||||| || || || ||||| | ||||||| |
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| T |
4744377 |
cacacactttagtttaaataatgttgtcctttgaacttccttgacaagcatagaaagtattccattcgtctctaattgtaagattatttaaagaataaag |
4744278 |
T |
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| Q |
289 |
tgtttgtccctaaatataatatcatctatac-aaatgtgtattttgttgttttatt |
343 |
Q |
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| T |
4744277 |
tttttgtccctaa-------atcatctatactaaatgtgtattttgttgttttatt |
4744229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 4730595 - 4730511
Alignment:
| Q |
156 |
tttattttataatgttgttacgtttatgaccattcacacactttaatttaaataat-ttgtcctttaaactttcttggcaagcat |
239 |
Q |
| |
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|||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||| ||||| || |||| |||| |
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| T |
4730595 |
tttattttataatgttgttacgtttatgacttgtctcacactttaatttaaataatgttgtcctttgaacttcctaggcatgcat |
4730511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 396 - 479
Target Start/End: Complemental strand, 4744216 - 4744136
Alignment:
| Q |
396 |
tttgattggctatacacaaa--gttagaaatggtttcaaaatcaaactttaattttactactaaacttacactctaagaacaacaa |
479 |
Q |
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||||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
4744216 |
tttgattggctatacccaaaaagttagaattggtttcaaaatcaaacttt-----tactacttaacttacactctaagaacaacaa |
4744136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 226
Target Start/End: Complemental strand, 4734414 - 4734297
Alignment:
| Q |
106 |
aattttatttgctcttaaacctaaaatttgatttgcatgtcataacaatgtttattttataatgttgttacgtttatgaccattcacacactttaattta |
205 |
Q |
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|||||||||| || |||||| |||||||| || |||| | |||| || |||||||||||||||||||||||||||||| || | |||||||||||| |
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| T |
4734414 |
aattttatttccttttaaacataaaattttatgtgcacgacatatca--gtttattttataatgttgttacgtttatga--tttgtctcactttaattta |
4734319 |
T |
|
| Q |
206 |
aataat-ttgtcctttaaactt |
226 |
Q |
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|||||| ||||||||| ||||| |
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| T |
4734318 |
aataatgttgtcctttgaactt |
4734297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 4744753 - 4744668
Alignment:
| Q |
48 |
atttccttaataatcgcacacaactctaaaacgaccattaaaatgagacggagggaggaattttatttgctcttaaacctaaaatt |
133 |
Q |
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||||| || |||| |||||||||||||| |||||| |||||||||||||||| | |||||||||||||||||| ||| ||||| |
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| T |
4744753 |
atttctttgataaccgcacacaactctataacgactattaaaatgagacggaaaaaacaattttatttgctcttaagcctgaaatt |
4744668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 37988920 - 37988879
Alignment:
| Q |
66 |
cacaactctaaaacgaccattaaaatgagacggagggaggaa |
107 |
Q |
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||||||||||||||||| |||||||||||||| | ||||||| |
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| T |
37988920 |
cacaactctaaaacgactattaaaatgagacgaatggaggaa |
37988879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 285 - 318
Target Start/End: Complemental strand, 30856266 - 30856233
Alignment:
| Q |
285 |
aaagtgtttgtccctaaatataatatcatctata |
318 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
30856266 |
aaagtgtttgtccctaaatataatatcatctata |
30856233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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