View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15455_low_3 (Length: 470)
Name: NF15455_low_3
Description: NF15455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15455_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 12 - 455
Target Start/End: Complemental strand, 44018685 - 44018231
Alignment:
| Q |
12 |
tagaatggtcgttgatgtcgaagtctttgcatcatatatat----------tctagttatttgctacgttatttccaccaacattccaagaaccttctgc |
101 |
Q |
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| T |
44018685 |
tagaatggccgttgatgtcgaagtctttgcatcatatatatatatatatattctagttatttgctacgttatttccaccaacattccaagaaccttctgc |
44018586 |
T |
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| Q |
102 |
ttttctcatataataaaaactcaatcgtctcattctgcatttcattcatccaagctagctagctacctcactgcaacaataacatcaaagcaagctggtc |
201 |
Q |
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| T |
44018585 |
ttttctcatataataaaaactcaatcgtctcattctgcatttcattcatccaaactagctagctacttcactgcaacaataacatcaaagcaagctggtt |
44018486 |
T |
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| Q |
202 |
ctaaattctttaccaaaatggctgcaaaacgttttcttgatgattttaatgaagacaaagtcaaaccaaatgacaaacgcatgagaactacgacaacttc |
301 |
Q |
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| T |
44018485 |
ctaaattctttaccaaaatggctgcaaaacgttttcttgatgattttaatgaagacaaagtcaaaccaaatgacaaacgcatgagaactacgacaacatc |
44018386 |
T |
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| Q |
302 |
ttcttttgcttcgtatg-ttttattccttaaaccaatcattttattatgnnnnnnncaatttataaaacttatttttgctttaactatacacgtagtttt |
400 |
Q |
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| T |
44018385 |
ttcttttgcttcgtatgtttttattccttaaaccaatcattttattatgtttttttcaatttataaaacttatttttgctttaactatacacgtagtttt |
44018286 |
T |
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| Q |
401 |
aattaaatgttgcataatatattaattactctcaattctcatgtgacagggtaat |
455 |
Q |
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| T |
44018285 |
aattaaatgttgcataatatattaattactctcaattctcatgtgacagggtaat |
44018231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 175 - 322
Target Start/End: Original strand, 44027775 - 44027922
Alignment:
| Q |
175 |
caacaataacatcaaagcaagctggtcctaaattctttaccaaaatggctgcaaaacgttttcttgatgattttaatgaagacaaagtcaaaccaaatga |
274 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| | ||||||| |||| ||||||||| |||||||||||| |
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| T |
44027775 |
caacaataacatcaaagcaagctggttctaaattctttaccaaaatggctgcaaaacggtttttcgatgattctaatcaagacaaagacaaaccaaatga |
44027874 |
T |
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| Q |
275 |
caaacgcatgagaactacgacaacttcttcttttgcttcgtatgtttt |
322 |
Q |
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| T |
44027875 |
caaacggataagaactacaacaataccttcttttgcttcgtatgtttt |
44027922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 153
Target Start/End: Original strand, 44027661 - 44027741
Alignment:
| Q |
71 |
tatttccaccaacattccaagaaccttctgcttttctcatataataaaaactcaa-tcgtctcattctgcatttcattcatcca |
153 |
Q |
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| T |
44027661 |
tatttcctccaatattcctagaagcttcttcttttcccatataa---aaactcaaatcgtctcattatgcctttcattcatcca |
44027741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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