View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15455_low_7 (Length: 379)
Name: NF15455_low_7
Description: NF15455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15455_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 96 - 372
Target Start/End: Original strand, 40847692 - 40847966
Alignment:
| Q |
96 |
accaatttttcgtctcacgaaatttgaagagacacaagatctcatttgtttctgcaacttcaatcattgctacaaaaaatacctaaatttcatatgtatt |
195 |
Q |
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| T |
40847692 |
accaatttttcgtctcacggaatttgaagagacacaagatctcatttgtttctgcaacttcaatcattgctacaaaaaatacctaaatttcataggtatt |
40847791 |
T |
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| Q |
196 |
taaactttaattagnnnnnnnnnnnnnnnnnnnnnnccaattatataaagtttagctgagctgtt-tttgaatcagtgtagttaaaacaaatggctcaaa |
294 |
Q |
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| T |
40847792 |
taaacttaaattag------ttctttttttttctttccaattatataaagtttagctgaactgttgtttgaatcactgtagttaaaacaaatggctcaaa |
40847885 |
T |
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| Q |
295 |
gaatcatttaccaaagttttcacagt---aacaatagttgaattcacgattatgaattgagggtatgtttagtttcatttc |
372 |
Q |
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|||| ||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40847886 |
gaataatttaccaaagtttttacggtaacaacaagagttgaattcacgattatgaattgagggtatgtttagtttcatttc |
40847966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 40843618 - 40843721
Alignment:
| Q |
1 |
ttatagctggctgtttaacaccgaaattcgtgtttagctgataattaatctctcgatccatctttgaccatttaatgcnnnnnnntacgaatactaccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40843618 |
ttatagctggctgtttaacaccgaaattcgtgtttagctgataattaatctctcgatccatctttgaccatttaatgcaaaaaaacacgaatactaccaa |
40843717 |
T |
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| Q |
101 |
tttt |
104 |
Q |
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|||| |
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| T |
40843718 |
tttt |
40843721 |
T |
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