View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15455_low_9 (Length: 327)

Name: NF15455_low_9
Description: NF15455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15455_low_9
NF15455_low_9
[»] chr3 (1 HSPs)
chr3 (4-314)||(17579247-17579557)
[»] scaffold0011 (1 HSPs)
scaffold0011 (14-224)||(17302-17512)
[»] chr2 (1 HSPs)
chr2 (14-214)||(16381787-16381987)
[»] chr7 (1 HSPs)
chr7 (240-281)||(37405659-37405700)
[»] chr8 (1 HSPs)
chr8 (253-281)||(14935571-14935599)
[»] chr6 (4 HSPs)
chr6 (253-281)||(15866574-15866602)
chr6 (253-281)||(15868386-15868414)
chr6 (253-281)||(32079904-32079932)
chr6 (253-281)||(33869240-33869268)
[»] chr5 (3 HSPs)
chr5 (253-281)||(25076325-25076353)
chr5 (253-281)||(25134294-25134322)
chr5 (253-281)||(39787268-39787296)
[»] chr4 (4 HSPs)
chr4 (253-281)||(18395843-18395871)
chr4 (253-281)||(23985768-23985796)
chr4 (253-281)||(24807418-24807446)
chr4 (253-281)||(52545310-52545338)
[»] chr1 (7 HSPs)
chr1 (253-281)||(3282795-3282823)
chr1 (253-281)||(3284496-3284524)
chr1 (253-281)||(5924983-5925011)
chr1 (253-281)||(9312023-9312051)
chr1 (253-281)||(37664764-37664792)
chr1 (253-281)||(37674486-37674514)
chr1 (253-281)||(37702180-37702208)


Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 4 - 314
Target Start/End: Complemental strand, 17579557 - 17579247
Alignment:
Q  4 cttcagttggtaaagtggacatctgaactttgcttgcttggaatctctaaatatagcccattcacttatgggatttcaagattgcccattattcactgtc 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17579557 cttcagttggtaaagtggacatctgaactttgcttgcttggaatctctaagtatagcccattcacttatgggatttcaagattgcccattattcattgtc 17579458  T
Q  104 taaccttttgctacttcacaaccacaactcaatatactattgcttacacactatatggaatcattcctcagatttgcttcttgaaaggaatttctgtatt 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17579457 taaccttttgctacttcacaaccacaactcaatatactattgcttacacactttatggaatcattcctcagatttgcttcttgaaaggaatttctgtatt 17579358  T
Q  204 tccaaaggtaaactacggatatgtagctaaacaagatttttattacaagatgaataatcaactatagttagttgatagtttcgggttcgattccctctag 303  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| |||| |||||||    
T  17579357 tccaaaggtaaactacggataagtagctaaacaagttttttattacaagatgaataatcaactatagttagttgatagtctcaggtttgatttcctctag 17579258  T
Q  304 tgtcaattttg 314  Q
    ||| |||||||    
T  17579257 tgttaattttg 17579247  T

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Target: scaffold0011 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 17302 - 17512
Alignment:
Q  14 taaagtggacatctgaactttgcttgcttggaatctctaaatatagcccattcacttatgggatttcaagattgcccattattcactgtctaaccttttg 113  Q
    |||| ||| ||||||||||||  || |||| ||||||||||||||| ||||||||||||||  ||||||||||||| | |||||| ||| |||| |||||    
T  17302 taaaatggtcatctgaacttttgttacttgcaatctctaaatatagtccattcacttatggcctttcaagattgcctactattcattgtttaactttttg 17401  T
Q  114 ctacttcacaaccacaactcaatatactattgcttacacactatatggaatcattcctcagatttgcttcttgaaaggaatttctgtatttccaaaggta 213  Q
     |||||   || |||||| |||| | | |  || || |  ||||||||| || |||||||||||||||||||||| |||||  |||||| ||||||||||    
T  17402 ttacttagtaagcacaacccaatttgcaacagcctatatcctatatggattcgttcctcagatttgcttcttgaagggaatacctgtatatccaaaggta 17501  T
Q  214 aactacggata 224  Q
    || || |||||    
T  17502 aaatatggata 17512  T

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Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 16381987 - 16381787
Alignment:
Q  14 taaagtggacatctgaactttgcttgcttggaatctctaaatatagcccattcacttatgggatttcaagattgcccattattcactgtctaaccttttg 113  Q
    ||||||||  |||||||||||  ||| ||| ||| ||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||| ||||||||||    
T  16381987 taaagtgggtatctgaacttttgttgtttgcaatatctaaatatagtccattcacttatgggatttcaagattgcctattgttcattgtttaaccttttg 16381888  T
Q  114 ctacttcacaaccacaactcaatatactattgcttacacactatatggaatcattcctcagatttgcttcttgaaaggaatttctgtatttccaaaggta 213  Q
      ||||  |||    | | | ||||  | || | ||||| |||||||||||  |||||||  ||||||||||| |||||||  |||||||||||||||||    
T  16381887 tcacttgtcaagtttagccctatatgttgttccatacaccctatatggaattgttcctcaactttgcttcttgcaaggaatacctgtatttccaaaggta 16381788  T
Q  214 a 214  Q
    |    
T  16381787 a 16381787  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 37405700 - 37405659
Alignment:
Q  240 tttttattacaagatgaataatcaactatagttagttgatag 281  Q
    ||||||||| |  |||||||||||||||||||||||||||||    
T  37405700 tttttattagagtatgaataatcaactatagttagttgatag 37405659  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Original strand, 14935571 - 14935599
Alignment:
Q  253 atgaataatcaactatagttagttgatag 281  Q
    |||||||||||||||||||||||||||||    
T  14935571 atgaataatcaactatagttagttgatag 14935599  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Original strand, 15866574 - 15866602
Alignment:
Q  253 atgaataatcaactatagttagttgatag 281  Q
    |||||||||||||||||||||||||||||    
T  15866574 atgaataatcaactatagttagttgatag 15866602  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Original strand, 15868386 - 15868414
Alignment:
Q  253 atgaataatcaactatagttagttgatag 281  Q
    |||||||||||||||||||||||||||||    
T  15868386 atgaataatcaactatagttagttgatag 15868414  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Original strand, 32079904 - 32079932
Alignment:
Q  253 atgaataatcaactatagttagttgatag 281  Q
    |||||||||||||||||||||||||||||    
T  32079904 atgaataatcaactatagttagttgatag 32079932  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Original strand, 33869240 - 33869268
Alignment:
Q  253 atgaataatcaactatagttagttgatag 281  Q
    |||||||||||||||||||||||||||||    
T  33869240 atgaataatcaactatagttagttgatag 33869268  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Complemental strand, 25076353 - 25076325
Alignment:
Q  253 atgaataatcaactatagttagttgatag 281  Q
    |||||||||||||||||||||||||||||    
T  25076353 atgaataatcaactatagttagttgatag 25076325  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Complemental strand, 25134322 - 25134294
Alignment:
Q  253 atgaataatcaactatagttagttgatag 281  Q
    |||||||||||||||||||||||||||||    
T  25134322 atgaataatcaactatagttagttgatag 25134294  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Complemental strand, 39787296 - 39787268
Alignment:
Q  253 atgaataatcaactatagttagttgatag 281  Q
    |||||||||||||||||||||||||||||    
T  39787296 atgaataatcaactatagttagttgatag 39787268  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Complemental strand, 18395871 - 18395843
Alignment:
Q  253 atgaataatcaactatagttagttgatag 281  Q
    |||||||||||||||||||||||||||||    
T  18395871 atgaataatcaactatagttagttgatag 18395843  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Original strand, 23985768 - 23985796
Alignment:
Q  253 atgaataatcaactatagttagttgatag 281  Q
    |||||||||||||||||||||||||||||    
T  23985768 atgaataatcaactatagttagttgatag 23985796  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Original strand, 24807418 - 24807446
Alignment:
Q  253 atgaataatcaactatagttagttgatag 281  Q
    |||||||||||||||||||||||||||||    
T  24807418 atgaataatcaactatagttagttgatag 24807446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Complemental strand, 52545338 - 52545310
Alignment:
Q  253 atgaataatcaactatagttagttgatag 281  Q
    |||||||||||||||||||||||||||||    
T  52545338 atgaataatcaactatagttagttgatag 52545310  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Original strand, 3282795 - 3282823
Alignment:
Q  253 atgaataatcaactatagttagttgatag 281  Q
    |||||||||||||||||||||||||||||    
T  3282795 atgaataatcaactatagttagttgatag 3282823  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Original strand, 3284496 - 3284524
Alignment:
Q  253 atgaataatcaactatagttagttgatag 281  Q
    |||||||||||||||||||||||||||||    
T  3284496 atgaataatcaactatagttagttgatag 3284524  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Complemental strand, 5925011 - 5924983
Alignment:
Q  253 atgaataatcaactatagttagttgatag 281  Q
    |||||||||||||||||||||||||||||    
T  5925011 atgaataatcaactatagttagttgatag 5924983  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Original strand, 9312023 - 9312051
Alignment:
Q  253 atgaataatcaactatagttagttgatag 281  Q
    |||||||||||||||||||||||||||||    
T  9312023 atgaataatcaactatagttagttgatag 9312051  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Complemental strand, 37664792 - 37664764
Alignment:
Q  253 atgaataatcaactatagttagttgatag 281  Q
    |||||||||||||||||||||||||||||    
T  37664792 atgaataatcaactatagttagttgatag 37664764  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Complemental strand, 37674514 - 37674486
Alignment:
Q  253 atgaataatcaactatagttagttgatag 281  Q
    |||||||||||||||||||||||||||||    
T  37674514 atgaataatcaactatagttagttgatag 37674486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Original strand, 37702180 - 37702208
Alignment:
Q  253 atgaataatcaactatagttagttgatag 281  Q
    |||||||||||||||||||||||||||||    
T  37702180 atgaataatcaactatagttagttgatag 37702208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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