View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_high_11 (Length: 539)
Name: NF15456_high_11
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Complemental strand, 8092481 - 8091961
Alignment:
| Q |
1 |
ttcctttttgtttgtcccagccagattttcacttttgctaaatcctggaatccatttccttgcagttacctcttccaacaaccttctatcttcttcaaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
8092481 |
ttcctttttgtttgtcccagccagattttcacttttgctaattcctggaatccatttccttgtagttacctcttccaacaaccttctatcttcttcagac |
8092382 |
T |
|
| Q |
101 |
aacttactcaatgatatgaattgcaacatctttgattgaaaatgaagtcccttgtttggagacgaagttcgtgtactcgacattggtcttgtggcattgt |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8092381 |
aacttactcaatgatatgaattgcaacatctttgactgaaaatgaagtcccttgtttggagacgaagttcgtgtactcgacattggtcttgtggcattgg |
8092282 |
T |
|
| Q |
201 |
gtctgtatcttacaaaggtaaccaactggtgaagccgaaccaatagttcgaggatgtgaaaatctatcttttgtttttcggcataatgaagtgtgtgaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8092281 |
gtctgtatcttacaaaggtaaccaactggtgaagccgaaccaatagttcgaggatgtgaaaatctatcttttgtttttcggcataatgaagtgtgtgaag |
8092182 |
T |
|
| Q |
301 |
acgaatatggttgctttctttgcctgatgtcatttctccaaactcattactgcaacacccacatcaaaagttagtaatagtcaaactaaatgccaagtgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8092181 |
acgaatatggttgctttctttgcctgatgtcatttctccaaactcattactgcaacacccacatcaaaagttagtaatagtcaaactaaatgccaagtgt |
8092082 |
T |
|
| Q |
401 |
aattctcatataaaacaagtacgacgagtgcatgtttggactgacaatgaattctactggatcactacattttaaagtttcattagaattacggtgctat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8092081 |
aattctcatataaaacaagtacgacgagtgcatgtttggactgacaatgaattctactggatcactacattttaaagtttcattagaattacggtgctat |
8091982 |
T |
|
| Q |
501 |
tgtaattttgccaaacgcacc |
521 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
8091981 |
tgtaattttgccaaacgcacc |
8091961 |
T |
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