View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15456_high_12 (Length: 526)

Name: NF15456_high_12
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15456_high_12
NF15456_high_12
[»] chr2 (4 HSPs)
chr2 (17-213)||(2814897-2815096)
chr2 (18-213)||(2820677-2820872)
chr2 (427-511)||(43779998-43780081)
chr2 (434-511)||(42755767-42755844)
[»] chr3 (12 HSPs)
chr3 (260-404)||(19269519-19269663)
chr3 (260-404)||(48757712-48757856)
chr3 (260-404)||(6891062-6891206)
chr3 (405-511)||(6891239-6891345)
chr3 (260-404)||(21433987-21434131)
chr3 (405-511)||(19269380-19269486)
chr3 (405-511)||(21434164-21434270)
chr3 (405-511)||(48757573-48757679)
chr3 (405-511)||(51818068-51818173)
chr3 (427-506)||(19237400-19237479)
chr3 (276-313)||(51818230-51818267)
chr3 (260-348)||(19237243-19237332)
[»] chr5 (9 HSPs)
chr5 (260-404)||(4307054-4307198)
chr5 (405-511)||(4306915-4307021)
chr5 (405-511)||(15917195-15917301)
chr5 (260-388)||(15497782-15497911)
chr5 (260-404)||(2985432-2985577)
chr5 (260-353)||(15917089-15917182)
chr5 (459-511)||(15497726-15497778)
chr5 (428-511)||(14316914-14316997)
chr5 (236-338)||(14316688-14316792)
[»] chr1 (4 HSPs)
chr1 (260-404)||(31867041-31867185)
chr1 (405-511)||(31867218-31867324)
chr1 (276-397)||(44352416-44352538)
chr1 (435-511)||(44352267-44352343)
[»] chr8 (6 HSPs)
chr8 (17-211)||(1428250-1428450)
chr8 (405-511)||(5643271-5643377)
chr8 (260-404)||(17838957-17839088)
chr8 (271-400)||(34844839-34844969)
chr8 (412-511)||(17839305-17839403)
chr8 (428-511)||(17839144-17839226)
[»] chr4 (14 HSPs)
chr4 (260-404)||(5517320-5517467)
chr4 (260-404)||(37236462-37236606)
chr4 (260-404)||(12680021-12680165)
chr4 (260-404)||(49908612-49908755)
chr4 (405-511)||(49908473-49908579)
chr4 (406-511)||(37236323-37236428)
chr4 (260-511)||(17555060-17555296)
chr4 (405-511)||(5517181-5517287)
chr4 (260-509)||(6211740-6212001)
chr4 (271-400)||(50720307-50720437)
chr4 (434-511)||(12679927-12680004)
chr4 (415-511)||(34770577-34770673)
chr4 (462-511)||(50720167-50720215)
chr4 (363-396)||(34770716-34770749)
[»] chr7 (5 HSPs)
chr7 (260-404)||(38826400-38826544)
chr7 (276-404)||(37966438-37966566)
chr7 (405-511)||(38826261-38826367)
chr7 (455-507)||(37966354-37966406)
chr7 (260-313)||(22937918-22937971)
[»] chr6 (9 HSPs)
chr6 (261-404)||(13647183-13647326)
chr6 (276-404)||(34385341-34385469)
chr6 (405-511)||(13647359-13647465)
chr6 (407-511)||(34385202-34385306)
chr6 (260-360)||(13647081-13647181)
chr6 (318-404)||(2753475-2753561)
chr6 (260-396)||(21149171-21149304)
chr6 (435-511)||(26218503-26218579)
chr6 (427-506)||(2753617-2753696)
[»] scaffold0057 (2 HSPs)
scaffold0057 (411-509)||(63854-63952)
scaffold0057 (267-404)||(63992-64128)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 2814897 - 2815096
Alignment:
Q  17 agattccaacttcaggaatgttatgagcggaatatatgatgctattagatccataacatt---gtacactgtcatcaaaacaagtggatacctaaacata 113  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  2814897 agattccaacttcaggaatgttatgagcagaatatatgatgctattagatccataacattattgtacactgtcatcaaaacaagtggatacctaaacata 2814996  T
Q  114 ttcaccaaatgcttttgtcaaaatccactttgaagttggatgcattaaaagtatatggaattgataaatacttaccatgttcctagcttgtgttgtccag 213  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2814997 ttcaccaaatgtttttgtcaaaatccactttgaagttgtatgcattaaaagtatatggaattgataaatacttaccatgttcctagcttgtgttgtccag 2815096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 2820677 - 2820872
Alignment:
Q  18 gattccaacttcaggaatgttatgagcggaatatatgatgctattagatccataacattgtacactgtcatcaaaacaagtggatacctaaacatattca 117  Q
    |||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2820677 gattccaacttcaggaatttgatgagcagaatatatgatgctattagatccataacattgtacactgtcatcaaaacaagtggatacctaaacatattca 2820776  T
Q  118 ccaaatgcttttgtcaaaatccacttt-gaagttggatgcattaaaagtatatggaattgataaatacttaccatgttcctagcttgtgttgtccag 213  Q
    ||||||| ||||||||||||||| ||| |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  2820777 ccaaatgtttttgtcaaaatccattttggaagttggatgcatcaaaag-atatggaattgataagtacttaccatgttcctagcttgtgtagtccag 2820872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 511
Target Start/End: Original strand, 43779998 - 43780081
Alignment:
Q  427 gccatactcatgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttcatagaatt 511  Q
    |||||||||||| || ||| | ||||||| || |||||| |||| ||  |||||||||| |||||||||||||||||||||||||    
T  43779998 gccatactcatgtaa-ttatatcactacatcagttaacattttttatatatctttcaaagagcttaatatatatttcatagaatt 43780081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 511
Target Start/End: Complemental strand, 42755844 - 42755767
Alignment:
Q  434 tcatgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttcatagaatt 511  Q
    ||||| ||||||  |||||||| || |||||| ||||||| |||| |||||||||  |||||||||||| ||| ||||    
T  42755844 tcatgtaaattagtccactacaacagttaacatttttgataaatccttcaaacagtataatatatattttatataatt 42755767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 6e-69; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 260 - 404
Target Start/End: Complemental strand, 19269663 - 19269519
Alignment:
Q  260 ggtaccgcaatgtttctatatatattatatcaggcattttatttacatattttccggctagcgcagtggaaaagcagttgctatttctctcagacgtcgc 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||    
T  19269663 ggtaccgcaatgtttctatatatattatatcaggcattttatttacatattttccagctagcgtagtggaaaagcagttgctatttctctcagacgttgc 19269564  T
Q  360 gggtttgattcttccttcttctcccttttttatatttctgtatat 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  19269563 gggtttgattcttccttcttctcccttttttatatttctgtatat 19269519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 260 - 404
Target Start/End: Complemental strand, 48757856 - 48757712
Alignment:
Q  260 ggtaccgcaatgtttctatatatattatatcaggcattttatttacatattttccggctagcgcagtggaaaagcagttgctatttctctcagacgtcgc 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||| ||    
T  48757856 ggtaccgcaatgtttctatatatattatatcaggcattttatttatatattttccagctagcgcagtggaaaagcagttgctatttttctcagacgttgc 48757757  T
Q  360 gggtttgattcttccttcttctcccttttttatatttctgtatat 404  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  48757756 gggttcgattcttccttcttctcccttttttatatttctgtatat 48757712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 260 - 404
Target Start/End: Original strand, 6891062 - 6891206
Alignment:
Q  260 ggtaccgcaatgtttctatatatattatatcaggcattttatttacatattttccggctagcgcagtggaaaagcagttgctatttctctcagacgtcgc 359  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |   |||||||||||| |||||||||||||||||||| ||||||||    
T  6891062 ggtaccgcaatgtttctatatatattatatcgggcattttatttacatatttttcaattagcgcagtggagaagcagttgctatttctctcggacgtcgc 6891161  T
Q  360 gggtttgattcttccttcttctcccttttttatatttctgtatat 404  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||    
T  6891162 gggttcgattcttccttcttgtcccttttttatatttctgtatat 6891206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 405 - 511
Target Start/End: Original strand, 6891239 - 6891345
Alignment:
Q  405 ggaatcgaacacacacctctgggccatactcatgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttca 504  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  6891239 ggaatcaaacacacacctctgagccatactcatgcaaattaaaccactacagcagttaacaattttgattaatttttcaaacagcttaatatatatttca 6891338  T
Q  505 tagaatt 511  Q
    |||||||    
T  6891339 tagaatt 6891345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 260 - 404
Target Start/End: Original strand, 21433987 - 21434131
Alignment:
Q  260 ggtaccgcaatgtttctatatatattatatcaggcattttatttacatattttccggctagcgcagtggaaaagcagttgctatttctctcagacgtcgc 359  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||||||||||  | |||||||||||||||||||||||  ||||||||||| ||| |    
T  21433987 ggtaccgcaatgtttctatatatattatatccggcatagtatttacatattttctagttagcgcagtggaaaagcagttgccttttctctcagaagtcac 21434086  T
Q  360 gggtttgattcttccttcttctcccttttttatatttctgtatat 404  Q
     |||| |||||||||||||||||||  ||||||||||||||||||    
T  21434087 aggttcgattcttccttcttctcccagttttatatttctgtatat 21434131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 405 - 511
Target Start/End: Complemental strand, 19269486 - 19269380
Alignment:
Q  405 ggaatcgaacacacacctctgggccatactcatgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttca 504  Q
    ||||||||||||||||||||  |||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  19269486 ggaatcgaacacacacctctaagccatactcatgtaaattaaaccactacagcagttaacatttttgattaatctttcaaacagcttaatatatatttca 19269387  T
Q  505 tagaatt 511  Q
    |||||||    
T  19269386 tagaatt 19269380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 405 - 511
Target Start/End: Original strand, 21434164 - 21434270
Alignment:
Q  405 ggaatcgaacacacacctctgggccatactcatgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttca 504  Q
    |||||| ||||||||||| |||||||||||||||  |||||||||||||||||| |||||| ||||||| |||||||||||||| |||||||||||||||    
T  21434164 ggaatcaaacacacacctttgggccatactcatgtcaattaaaccactacagcagttaacatttttgataaatctttcaaacagtttaatatatatttca 21434263  T
Q  505 tagaatt 511  Q
    |||||||    
T  21434264 tagaatt 21434270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 405 - 511
Target Start/End: Complemental strand, 48757679 - 48757573
Alignment:
Q  405 ggaatcgaacacacacctctgggccatactcatgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttca 504  Q
    ||||| ||||||||||||||| || |||| |||| |||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  48757679 ggaattgaacacacacctctgagctatacccatgtaaattaaatcactacagcagttaacatttttgattaatctttcaaacagcttaatatatatttca 48757580  T
Q  505 tagaatt 511  Q
    |||||||    
T  48757579 tagaatt 48757573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 405 - 511
Target Start/End: Complemental strand, 51818173 - 51818068
Alignment:
Q  405 ggaatcgaacacacacctctgggccatactcatgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttca 504  Q
    |||||| ||||||| |||||| |||||| ||||| ||||||| ||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  51818173 ggaatcaaacacacgcctctgcgccatattcatgtaaattaa-ccattacagcaattaacatttttgataaatctttcaaacagcttaatatatatttca 51818075  T
Q  505 tagaatt 511  Q
    |||||||    
T  51818074 tagaatt 51818068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 427 - 506
Target Start/End: Original strand, 19237400 - 19237479
Alignment:
Q  427 gccatactcatgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttcata 506  Q
    |||||| ||||| |||||| |||||||||| | |||||| ||||||| |||  |||||||| ||||||||||||||||||    
T  19237400 gccatattcatgtaaattataccactacagtagttaacatttttgataaattcttcaaacaacttaatatatatttcata 19237479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 51818267 - 51818230
Alignment:
Q  276 tatatatattatatcaggcattttatttacatattttc 313  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  51818267 tatatatattatatcaggcatattatttacatattttc 51818230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 348
Target Start/End: Original strand, 19237243 - 19237332
Alignment:
Q  260 ggtaccgcaatgtttctatatatattatatcaggcattttatttacat-attttccggctagcgcagtggaaaagcagttgctatttctc 348  Q
    |||||| ||| | |||||||||||||||||| || || |||||||||| ||||||| | ||||  ||||||||| || ||||| ||||||    
T  19237243 ggtaccacaagggttctatatatattatatccggtatattatttacatcattttccagttagcatagtggaaaaacaattgctttttctc 19237332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 4e-64; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 260 - 404
Target Start/End: Complemental strand, 4307198 - 4307054
Alignment:
Q  260 ggtaccgcaatgtttctatatatattatatcaggcattttatttacatattttccggctagcgcagtggaaaagcagttgctatttctctcagacgtcgc 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| ||    
T  4307198 ggtaccgcaatgtttctatatatattatatcaggcattttatttacatattttctaactagcgcagtggaaaagcagttgctatttctctcagacgttgc 4307099  T
Q  360 gggtttgattcttccttcttctcccttttttatatttctgtatat 404  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  4307098 gggttcgattcttccttcttctcccttttttatatttctgtatat 4307054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 405 - 511
Target Start/End: Complemental strand, 4307021 - 4306915
Alignment:
Q  405 ggaatcgaacacacacctctgggccatactcatgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttca 504  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||    
T  4307021 ggaatcgaacacacacctctgggccatactcatgtaaattaaaccactacagcagttaacatttttgattaatctttcaaacagtttaatatatatttca 4306922  T
Q  505 tagaatt 511  Q
    |||||||    
T  4306921 tagaatt 4306915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 405 - 511
Target Start/End: Original strand, 15917195 - 15917301
Alignment:
Q  405 ggaatcgaacacacacctctgggccatactcatgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttca 504  Q
    |||||||||||||||||| ||||||||||||||| ||||| ||||||||||||| |||||| ||||||| ||||||||||||| |||||| |||||||||    
T  15917195 ggaatcgaacacacacctttgggccatactcatgtaaattgaaccactacagcagttaacatttttgataaatctttcaaacaacttaatgtatatttca 15917294  T
Q  505 tagaatt 511  Q
    |||||||    
T  15917295 tagaatt 15917301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 260 - 388
Target Start/End: Complemental strand, 15497911 - 15497782
Alignment:
Q  260 ggtaccgcaatgtttctatatatattatatcaggcattttatttacatattttccggctagcgcagtggaaaagcagttgctatttctctcagac-gtcg 358  Q
    |||||| |||||||||||||||||||| ||||||||||||||| |||||||||     |||||||||||||||| ||||||| ||||||  |||| ||||    
T  15497911 ggtaccccaatgtttctatatatattacatcaggcattttattaacatattttatatgtagcgcagtggaaaagtagttgctttttctccaagacggtcg 15497812  T
Q  359 cgggtttgattcttccttcttctccctttt 388  Q
    || |||  ||||||||||||||||||||||    
T  15497811 cgagttcaattcttccttcttctccctttt 15497782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 260 - 404
Target Start/End: Original strand, 2985432 - 2985577
Alignment:
Q  260 ggtaccgcaatgtttctatatatattatatcaggcattttatttacat-attttccggctagcgcagtggaaaagcagttgctatttctctcagacgtcg 358  Q
    |||||| ||| ||||||||||||||||||||  |||| |||||| ||| ||||||| | |||||||| |||||| || ||||| ||||||  ||| || |    
T  2985432 ggtaccacaaggtttctatatatattatatccagcatattatttgcatcattttccagttagcgcagcggaaaatcacttgctttttctcctagaagttg 2985531  T
Q  359 cgggtttgattcttccttcttctcccttttttatatttctgtatat 404  Q
    || ||| || |||||||||||||||||||||||||||| |||||||    
T  2985532 cgtgttcgactcttccttcttctcccttttttatatttatgtatat 2985577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 260 - 353
Target Start/End: Original strand, 15917089 - 15917182
Alignment:
Q  260 ggtaccgcaatgtttctatatatattatatcaggcattttatttacatattttccggctagcgcagtggaaaagcagttgctatttctctcaga 353  Q
    ||||||||||||||||||||||||||||||| ||||  ||||||||| ||||||    ||| ||||||||||||| | |||| |||||||||||    
T  15917089 ggtaccgcaatgtttctatatatattatatccggcaaattatttacaaattttctaattagtgcagtggaaaagcggatgctttttctctcaga 15917182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 459 - 511
Target Start/End: Complemental strand, 15497778 - 15497726
Alignment:
Q  459 attaacaattttgattaatctttcaaacagcttaatatatatttcatagaatt 511  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  15497778 attaacatttttgatgaatctttcaaacagcttaatatatatttcatagaatt 15497726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 428 - 511
Target Start/End: Original strand, 14316914 - 14316997
Alignment:
Q  428 ccatactcatgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttcatagaatt 511  Q
    ||||||||||| |||||| ||||||| |  | |||||| |||| ||  ||||||||||||||||||||||||||||||||||||    
T  14316914 ccatactcatgtaaattataccactaaattagttaacattttttatatatctttcaaacagcttaatatatatttcatagaatt 14316997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 338
Target Start/End: Original strand, 14316688 - 14316792
Alignment:
Q  236 cgataattaatggcggatcttcaa-ggtaccgcaatgtttctatatatattatatcaggcattttatttacat-attttccggctagcgcagtggaaaag 333  Q
    ||||||| | ||||||||||||   |||||| ||| |||||||||||||||||||| | ||| ||||| |||| ||||| | | | ||||||||||||||    
T  14316688 cgataatcagtggcggatcttccttggtaccccaaggtttctatatatattatatccgacatattattcacatcatttttcagttggcgcagtggaaaag 14316787  T
Q  334 cagtt 338  Q
    |||||    
T  14316788 cagtt 14316792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 260 - 404
Target Start/End: Original strand, 31867041 - 31867185
Alignment:
Q  260 ggtaccgcaatgtttctatatatattatatcaggcattttatttacatattttccggctagcgcagtggaaaagcagttgctatttctctcagacgtcgc 359  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||    
T  31867041 ggtaccgcaatgtttctatatatattatattgggcattttatttacatattttccagttagcgcagtggagaagcagttgctatttctctcagacgtcgc 31867140  T
Q  360 gggtttgattcttccttcttctcccttttttatatttctgtatat 404  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||    
T  31867141 gggttcgattcttccttcttgtcccttttttatatttctgtatat 31867185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 405 - 511
Target Start/End: Original strand, 31867218 - 31867324
Alignment:
Q  405 ggaatcgaacacacacctctgggccatactcatgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttca 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  31867218 ggaatcgaacacacacctctgggccatactcatgcaaattaaaccactacagcagttaacatttttgattaatctttcaaacagcttaatatatatttca 31867317  T
Q  505 tagaatt 511  Q
    |||||||    
T  31867318 tagaatt 31867324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 276 - 397
Target Start/End: Complemental strand, 44352538 - 44352416
Alignment:
Q  276 tatatatat-tatatcaggcattttatttacat-attttccggctagcgcagtggaaaagcagttgctatttctctcagacgtcgcgggtttgattcttc 373  Q
    ||||||||| |||||||||||||| ||||| || ||||||| | ||||||||||||||||||||| || |||||| |||| |||||| ||| || |||||    
T  44352538 tatatatatatatatcaggcattt-atttatatcattttccagttagcgcagtggaaaagcagttactttttctcccagatgtcgcgtgttcgactcttc 44352440  T
Q  374 cttcttctcccttttttatatttc 397  Q
      ||||||||||||||||||||||    
T  44352439 tatcttctcccttttttatatttc 44352416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 435 - 511
Target Start/End: Complemental strand, 44352343 - 44352267
Alignment:
Q  435 catgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttcatagaatt 511  Q
    |||| |||||| |||||||||| | |||||| ||||||| |||  ||||||||||||||||||||||||||||||||    
T  44352343 catgtaaattataccactacagtagttaacatttttgataaattcttcaaacagcttaatatatatttcatagaatt 44352267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 4e-58; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 1428450 - 1428250
Alignment:
Q  17 agattccaacttcaggaatgttatgagcggaatatatgatgctattagatccataacattgtacactgtcatcaaaacaagtggatacctaaacatattc 116  Q
    ||||||||| |||| |||| | ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1428450 agattccaatttcaagaatttgatgaggggaatatatgatgctattagatccataacattgtacattgtcatcaaaacaagtggatacctaaacatattc 1428351  T
Q  117 accaaatgctt------ttgtcaaaatccacttt-gaagttggatgcattaaaagtatatggaattgataaatacttaccatgttcctagcttgtgttgt 209  Q
    |||||||| ||      |||||||||| || ||| ||||||| |||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  1428350 accaaatgtttaatttcttgtcaaaattcaatttggaagttgaatgcatcaaaa-tatatggaattgataaatgcttaccatgttcctagcttgtgttgt 1428252  T
Q  210 cc 211  Q
    ||    
T  1428251 cc 1428250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 405 - 511
Target Start/End: Complemental strand, 5643377 - 5643271
Alignment:
Q  405 ggaatcgaacacacacctctgggccatactcatgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttca 504  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||| |||||| |||||| |||||||  |||||||||||||||||||||||||||||    
T  5643377 ggaatcgaacacacacctttgggccatactcatgtaaattaaaccacaacagcagttaacatttttgatatatctttcaaacagcttaatatatatttca 5643278  T
Q  505 tagaatt 511  Q
    |||||||    
T  5643277 tagaatt 5643271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 260 - 404
Target Start/End: Original strand, 17838957 - 17839088
Alignment:
Q  260 ggtaccgcaatgtttctatatatattatatcaggcattttatttacatattttccggctagcgcagtggaaaagcagttgctatttctctcagacgtcgc 359  Q
    ||||||||||||||||||||||||||||||||||||| ||  |||           | |||||||||||||||| ||||||| ||||||  ||| |||||    
T  17838957 ggtaccgcaatgtttctatatatattatatcaggcatatt--tta-----------ggtagcgcagtggaaaagtagttgctttttctccgagatgtcgc 17839043  T
Q  360 gggtttgattcttccttcttctcccttttttatatttctgtatat 404  Q
    | ||| |||||||||||||||||||||||||||||||||||||||    
T  17839044 gagttcgattcttccttcttctcccttttttatatttctgtatat 17839088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 271 - 400
Target Start/End: Original strand, 34844839 - 34844969
Alignment:
Q  271 gtttctatatatattatatcaggcattttatttacat-attttccggctagcgcagtggaaaagcagttgctatttctctcagacgtcgcgggtttgatt 369  Q
    |||||||||||||||||||| ||||| |||||||||| ||||||| | |||||  |||||||||||||| || |||||| || |||||||| |||  | |    
T  34844839 gtttctatatatattatatccggcatattatttacatcattttccagttagcgtggtggaaaagcagttactttttctcccacacgtcgcgtgttcaact 34844938  T
Q  370 cttccttcttctcccttttttatatttctgt 400  Q
    ||||  |||||||||||||||||||||||||    
T  34844939 cttctatcttctcccttttttatatttctgt 34844969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 412 - 511
Target Start/End: Original strand, 17839305 - 17839403
Alignment:
Q  412 aacacacacctctgggccatactcatgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttcatagaatt 511  Q
    ||||||| |||||  |||||||||||| ||||||| ||| ||||||| |||||| || |||| |||||||||||| ||||||||||||||||||| ||||    
T  17839305 aacacacgcctctacgccatactcatgtaaattaa-ccattacagcagttaacatttatgataaatctttcaaactgcttaatatatatttcatacaatt 17839403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 428 - 511
Target Start/End: Original strand, 17839144 - 17839226
Alignment:
Q  428 ccatactcatgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttcatagaatt 511  Q
    ||||||||||| ||||||| ||| ||||||| |||||| || |||| |||| ||||||||||||||||||||||||||| ||||    
T  17839144 ccatactcatgtaaattaa-ccattacagcagttaacatttatgataaatcattcaaacagcttaatatatatttcatacaatt 17839226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 260 - 404
Target Start/End: Complemental strand, 5517467 - 5517320
Alignment:
Q  260 ggtaccgcaatgtttctatatatattatatcaggcattttatttacatattttccggctagcgcagtggaaaagcagttgctatttctctcaga---cgt 356  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||   ||     
T  5517467 ggtaccacaatgtttctatatatattatattaggcattttatttacatattttccagctagcgcagtggaaaagcagttgctatttttctcagacatcgc 5517368  T
Q  357 cgcgggtttgattcttccttcttctcccttttttatatttctgtatat 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5517367 cgcgggtttgattcttccttcttctcccttttttatatttctgtatat 5517320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 260 - 404
Target Start/End: Complemental strand, 37236606 - 37236462
Alignment:
Q  260 ggtaccgcaatgtttctatatatattatatcaggcattttatttacatattttccggctagcgcagtggaaaagcagttgctatttctctcagacgtcgc 359  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| || ||    
T  37236606 ggtaccgtaatgtttctatatatattatatcagacattttatttacatattttccagctagcgcagtggaaaagtagttgctatttctcttagatgttgc 37236507  T
Q  360 gggtttgattcttccttcttctcccttttttatatttctgtatat 404  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  37236506 gggtttgattcttccttcttctcccttttttatatttatgtatat 37236462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 260 - 404
Target Start/End: Complemental strand, 12680165 - 12680021
Alignment:
Q  260 ggtaccgcaatgtttctatatatattatatcaggcattttatttacatattttccggctagcgcagtggaaaagcagttgctatttctctcagacgtcgc 359  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| |||||| |||||||| |    
T  12680165 ggtaccccaatatttctatatatattatatcaggcatattatttacatattttccagttagcgcagtggaaaagcagttgctttttctcccagacgtcac 12680066  T
Q  360 gggtttgattcttccttcttctcccttttttatatttctgtatat 404  Q
    | ||||||||||||||||||||||||||||||||||| |||||||    
T  12680065 gagtttgattcttccttcttctcccttttttatatttttgtatat 12680021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 260 - 404
Target Start/End: Complemental strand, 49908755 - 49908612
Alignment:
Q  260 ggtaccgcaatgtttctatatatattatatcaggcattttatttacatattttccggctagcgcagtggaaaagcagttgctatttctctcagacgtcgc 359  Q
    ||||||||||||||| ||||||||||||||| ||||||||| | |||| |||||| | |||||||||||| ||||||||| |||||||||||||||||||    
T  49908755 ggtaccgcaatgttt-tatatatattatatcgggcattttactcacatgttttccagttagcgcagtggagaagcagttgttatttctctcagacgtcgc 49908657  T
Q  360 gggtttgattcttccttcttctcccttttttatatttctgtatat 404  Q
      ||| |||||||||||||| ||||||||||||||||||||||||    
T  49908656 atgttcgattcttccttcttgtcccttttttatatttctgtatat 49908612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 405 - 511
Target Start/End: Complemental strand, 49908579 - 49908473
Alignment:
Q  405 ggaatcgaacacacacctctgggccatactcatgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttca 504  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||| ||||||||||||||||    
T  49908579 ggaatcaaacacacacctctgggccatactcatgcaaattaaaccactacagcagttaacattttttattaatctttcaaacaacttaatatatatttca 49908480  T
Q  505 tagaatt 511  Q
    |||||||    
T  49908479 tagaatt 49908473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 406 - 511
Target Start/End: Complemental strand, 37236428 - 37236323
Alignment:
Q  406 gaatcgaacacacacctctgggccatactcatgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttcat 505  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||    
T  37236428 gaatcgaacacacacctttgggccatactcatgtaaattaaaccactacagcagttaacatttttgattaatatttcaaacagcttaatatatatttcat 37236329  T
Q  506 agaatt 511  Q
    ||||||    
T  37236328 agaatt 37236323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 260 - 511
Target Start/End: Original strand, 17555060 - 17555296
Alignment:
Q  260 ggtaccgcaatgtttctatatatattatatcaggcattttatttacatattttccggctagcgcagtggaaaagcagttgctatttctctcagacgtcgc 359  Q
    |||||| ||||||||||||||||||||||||||||||   |||||||| |||||  |   |||||||||||||| ||||||| | ||| ||||| |||||    
T  17555060 ggtaccccaatgtttctatatatattatatcaggcataacatttacatgttttctaggaggcgcagtggaaaagtagttgctttatctttcagatgtcgc 17555159  T
Q  360 gggtttgattcttccttcttctcccttttttatatttctgtatatggaatcgaacacacacctctgggccatactcatgcaaattaaaccactacagcaa 459  Q
      |||  |||||||||| ||||||||||||               ||| |||||||||| |||||| |||| | ||||  ||||||||||||||||||||    
T  17555160 aagttcaattcttcctttttctcccttttt---------------ggattcgaacacacgcctctgcgccaaattcatttaaattaaaccactacagcaa 17555244  T
Q  460 ttaacaattttgattaatctttcaaacagcttaatatatatttcatagaatt 511  Q
    |||||| |||||||||||||||||||| ||| ||||||||||||||||||||    
T  17555245 ttaacatttttgattaatctttcaaaccgctgaatatatatttcatagaatt 17555296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 405 - 511
Target Start/End: Complemental strand, 5517287 - 5517181
Alignment:
Q  405 ggaatcgaacacacacctctgggccatactcatgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttca 504  Q
    ||||||||||||||||||||  |||||||||||| ||||||||||||||||| | |||||| |||| |||||||||||||||||||||||||||||||||    
T  5517287 ggaatcgaacacacacctctaagccatactcatgaaaattaaaccactacagaagttaacatttttaattaatctttcaaacagcttaatatatatttca 5517188  T
Q  505 tagaatt 511  Q
    |||||||    
T  5517187 tagaatt 5517181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 260 - 509
Target Start/End: Complemental strand, 6212001 - 6211740
Alignment:
Q  260 ggtaccgcaatgtttctatatatattatatcaggcattttatttacatattttccggctagcgcagtggaaaagcagttgctatttctctcagacgtcgc 359  Q
    |||||| |||||||||||||||||||||||||| ||| |||||| |||||||||  | |||| |||||| |||| ||||| | || ||| |||| ||||     
T  6212001 ggtaccacaatgtttctatatatattatatcagacatattatttccatattttctaggtagcacagtgg-aaagaagttgtttttactcccagatgtcgt 6211903  T
Q  360 gggtttgattcttccttcttctcccttttttatatttctgt------atat--------ggaatcgaacacacacctctgggccatactcatgcaaatta 445  Q
    | ||| ||||||||||||||||||||||||||||||| |||      ||||        ||| ||||||||||||||||| |||||| ||| | |||||     
T  6211902 gagttcgattcttccttcttctcccttttttatatttttgtcaaaaaatatccatggagggattcgaacacacacctctgcgccatattcaagtaaatt- 6211804  T
Q  446 aaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttcatagaa 509  Q
    || || |||| || |||||| || |||| |||||||||||||||||||||||||||||| ||||    
T  6211803 aatcattacaacagttaacatttatgataaatctttcaaacagcttaatatatatttcaaagaa 6211740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 271 - 400
Target Start/End: Complemental strand, 50720437 - 50720307
Alignment:
Q  271 gtttctatatatattatatcaggcattttatttacat-attttccggctagcgcagtggaaaagcagttgctatttctctcagacgtcgcgggtttgatt 369  Q
    |||||||||||||||||||| ||||| |||||||||| ||||| |   |||||| |||||||||||||| || |||||| ||||||||||| ||| || |    
T  50720437 gtttctatatatattatatccggcatgttatttacattatttttcaattagcgcggtggaaaagcagttactttttctcccagacgtcgcgtgttcgact 50720338  T
Q  370 cttccttcttctcccttttttatatttctgt 400  Q
    ||||  |||||||||||||||||||||||||    
T  50720337 cttctatcttctcccttttttatatttctgt 50720307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 434 - 511
Target Start/End: Complemental strand, 12680004 - 12679927
Alignment:
Q  434 tcatgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttcatagaatt 511  Q
    ||||| |||||||||||||||| || |||||| ||||||| |||||||||||||||||||||||||||||| ||||||    
T  12680004 tcatgtaaattaaaccactacaacagttaacatttttgataaatctttcaaacagcttaatatatatttcaaagaatt 12679927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 415 - 511
Target Start/End: Complemental strand, 34770673 - 34770577
Alignment:
Q  415 acacacctctgggccatactcatgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttcatagaatt 511  Q
    |||||||||| ||  ||||||||| |||||||||||||| |||| |||  | ||||||  |||||||||||||||||||||||||||||||||||||    
T  34770673 acacacctctaggttatactcatgtaaattaaaccactatagcagttataagttttgacaaatctttcaaacagcttaatatatatttcatagaatt 34770577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 462 - 511
Target Start/End: Complemental strand, 50720215 - 50720167
Alignment:
Q  462 aacaattttgattaatctttcaaacagcttaatatatatttcatagaatt 511  Q
    |||| ||||||| |||||| ||||||||||||||||||||||||||||||    
T  50720215 aacatttttgataaatctt-caaacagcttaatatatatttcatagaatt 50720167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 396
Target Start/End: Complemental strand, 34770749 - 34770716
Alignment:
Q  363 tttgattcttccttcttctcccttttttatattt 396  Q
    |||||||||| |||||||||||||||||||||||    
T  34770749 tttgattctttcttcttctcccttttttatattt 34770716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 260 - 404
Target Start/End: Complemental strand, 38826544 - 38826400
Alignment:
Q  260 ggtaccgcaatgtttctatatatattatatcaggcattttatttacatattttccggctagcgcagtggaaaagcagttgctatttctctcagacgtcgc 359  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| | |||||||||||| ||||||||| |||||||||||||||||||    
T  38826544 ggtaccgcaatgtttctatatatattatatcgggcattttatttatatattttccagttagcgcagtggagaagcagttgttatttctctcagacgtcgc 38826445  T
Q  360 gggtttgattcttccttcttctcccttttttatatttctgtatat 404  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||||    
T  38826444 gggttcgattcttctttcttgtcccttttttatatttctgtatat 38826400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 276 - 404
Target Start/End: Complemental strand, 37966566 - 37966438
Alignment:
Q  276 tatatatattatatcaggcattttatttacatattttccggctagcgcagtggaaaagcagttgctatttctctcagacgtcgcgggtttgattcttcct 375  Q
    ||||||||||||||||| ||| |||||||||||||||||   |||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||    
T  37966566 tatatatattatatcagacatattatttacatattttccaattagcgcagtggaaaagcagttgctttttctctcagacgtcgcgagtttgattctttct 37966467  T
Q  376 tcttctcccttttttatatttctgtatat 404  Q
    ||||||||||||||||||||| |||||||    
T  37966466 tcttctcccttttttatatttttgtatat 37966438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 405 - 511
Target Start/End: Complemental strand, 38826367 - 38826261
Alignment:
Q  405 ggaatcgaacacacacctctgggccatactcatgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttca 504  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||| |||| |||||||||||||||||||||||||||||||||    
T  38826367 ggaatcaaacacacacctctgggccatactcatgcaaattaaaccactacatcagttaacattttttattaatctttcaaacagcttaatatatatttca 38826268  T
Q  505 tagaatt 511  Q
    |||||||    
T  38826267 tagaatt 38826261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 455 - 507
Target Start/End: Complemental strand, 37966406 - 37966354
Alignment:
Q  455 agcaattaacaattttgattaatctttcaaacagcttaatatatatttcatag 507  Q
    ||||||||||| ||||||| ||||||||||||| ||||||||||| |||||||    
T  37966406 agcaattaacatttttgataaatctttcaaacaacttaatatatagttcatag 37966354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 22937971 - 22937918
Alignment:
Q  260 ggtaccgcaatgtttctatatatattatatcaggcattttatttacatattttc 313  Q
    |||||| | |||||||||||||||||||||||| ||| ||| ||||||||||||    
T  22937971 ggtacctcgatgtttctatatatattatatcagacatattaattacatattttc 22937918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 8e-47; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 261 - 404
Target Start/End: Original strand, 13647183 - 13647326
Alignment:
Q  261 gtaccgcaatgtttctatatatattatatcaggcattttatttacatattttccggctagcgcagtggaaaagcagttgctatttctctcagacgtcgcg 360  Q
    |||||| ||||||||||||||||||||||| ||||| |||||||||||||||  || |||||||||||||||||| ||||| ||||||||||| ||||||    
T  13647183 gtaccgtaatgtttctatatatattatatccggcatattatttacatattttttggttagcgcagtggaaaagcaattgctttttctctcagaagtcgcg 13647282  T
Q  361 ggtttgattcttccttcttctcccttttttatatttctgtatat 404  Q
     ||| ||||||||||||||||||| |||||||||||||||||||    
T  13647283 agttcgattcttccttcttctcccatttttatatttctgtatat 13647326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 276 - 404
Target Start/End: Complemental strand, 34385469 - 34385341
Alignment:
Q  276 tatatatattatatcaggcattttatttacatattttccggctagcgcagtggaaaagcagttgctatttctctcagacgtcgcgggtttgattcttcct 375  Q
    ||||||||||||||||||||| |||||| |||||||||  | ||||  ||||||||||||||||||  ||||||||||||||||| ||| ||||||||||    
T  34385469 tatatatattatatcaggcatgttatttgcatattttctagttagcatagtggaaaagcagttgcttgttctctcagacgtcgcgagttcgattcttcct 34385370  T
Q  376 tcttctcccttttttatatttctgtatat 404  Q
    |||||||| ||||||||||||||||||||    
T  34385369 tcttctcctttttttatatttctgtatat 34385341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 405 - 511
Target Start/End: Original strand, 13647359 - 13647465
Alignment:
Q  405 ggaatcgaacacacacctctgggccatactcatgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttca 504  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||| |||||||  || ||||||||||||||||||||||||||    
T  13647359 ggaatcgaacacacacctttgggccatactcatgtaaattaaaccactacagcagttaacatttttgatatatttttcaaacagcttaatatatatttca 13647458  T
Q  505 tagaatt 511  Q
    |||||||    
T  13647459 tagaatt 13647465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 407 - 511
Target Start/End: Complemental strand, 34385306 - 34385202
Alignment:
Q  407 aatcgaacacacacctctgggccatactcatgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttcata 506  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||  | |||||| || |||| ||||||||||||||||||||||||||||||||    
T  34385306 aatcgaacacacacctctgggccctactcatgtaaattaaaccactacaatagttaacatttatgataaatctttcaaacagcttaatatatatttcata 34385207  T
Q  507 gaatt 511  Q
    |||||    
T  34385206 gaatt 34385202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 260 - 360
Target Start/End: Original strand, 13647081 - 13647181
Alignment:
Q  260 ggtaccgcaatgtttctatatatattatatcaggcattttatttacatattttccggctagcgcagtggaaaagcagttgctatttctctcagacgtcgc 359  Q
    ||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| || |||||||||||||||||| ||||| ||||||||||| |||||    
T  13647081 ggtaccgtaatgtttctatatatattatatccggcatattatttacatattttctggttagcgcagtggaaaagcaattgctttttctctcagaagtcgc 13647180  T
Q  360 g 360  Q
    |    
T  13647181 g 13647181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 318 - 404
Target Start/End: Original strand, 2753475 - 2753561
Alignment:
Q  318 tagcgcagtggaaaagcagttgctatttctctcagacgtcgcgggtttgattcttccttcttctcccttttttatatttctgtatat 404  Q
    |||||||||||||||||||||| | ||||||   ||||||||| ||| || ||||||||||||||||||||||||||||||||||||    
T  2753475 tagcgcagtggaaaagcagttgttttttctcctcgacgtcgcgtgttcgactcttccttcttctcccttttttatatttctgtatat 2753561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 396
Target Start/End: Complemental strand, 21149304 - 21149171
Alignment:
Q  260 ggtaccgcaatgtttctatatatattatatcaggcattttatttacatattttccggctagcgcagtggaaaagcagttgctatttctctcagacgtcgc 359  Q
    |||||| |||||||||||||||||||||||||| |||||||||||  | |||||  | | ||   ||||||||  ||||||| |||||| || |  |||     
T  21149304 ggtacctcaatgtttctatatatattatatcagacattttatttatgtgttttctaggtggc---gtggaaaattagttgctttttctcccaaatatcgt 21149208  T
Q  360 gggtttgattcttccttcttctcccttttttatattt 396  Q
    | ||| |||||||||||||||||||||||||||||||    
T  21149207 gagttcgattcttccttcttctcccttttttatattt 21149171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 435 - 511
Target Start/End: Complemental strand, 26218579 - 26218503
Alignment:
Q  435 catgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttcatagaatt 511  Q
    |||| |||||| |||||| || ||||||||| ||||||| |||| ||||||||||||||||||||||||||| ||||    
T  26218579 catgtaaattataccactgcaacaattaacatttttgataaatccttcaaacagcttaatatatatttcatataatt 26218503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 427 - 506
Target Start/End: Original strand, 2753617 - 2753696
Alignment:
Q  427 gccatactcatgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttcata 506  Q
    |||||| ||||| |||||| |||||||||| | |||||| |||| || |||| |||||||||||||||||||||||||||    
T  2753617 gccatattcatgtaaattataccactacagtagttaacattttttataaatccttcaaacagcttaatatatatttcata 2753696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 411 - 509
Target Start/End: Complemental strand, 63952 - 63854
Alignment:
Q  411 gaacacacacctctgggccatactcatgcaaattaaaccactacagcaattaacaattttgattaatctttcaaacagcttaatatatatttcatagaa 509  Q
    |||||||| ||||||||||||| ||||| |||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  63952 gaacacacgcctctgggccataatcatgaaaattaaaccactacaacaattaacatttttgataaatctttcaaacagcttaatatatatttcatagaa 63854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 267 - 404
Target Start/End: Complemental strand, 64128 - 63992
Alignment:
Q  267 caatgtttctatatatattatatcaggcattttatttacatattttccggctagcgcagtggaaaagcagttgctatttctctcagacgtcgcgggtttg 366  Q
    |||||||||||||||||||||||||| ||| |  ||||  |||||||  | ||| |||||||||||||| ||||| |||||||||||||||||  ||| |    
T  64128 caatgtttctatatatattatatcagtcatatcttttatgtattttctagttagtgcagtggaaaagcacttgctttttctctcagacgtcgcaagttcg 64029  T
Q  367 attcttccttcttctcccttttttatatttctgtatat 404  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  64028 attcttccttcttctccct-ttttatatttctgtatat 63992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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