View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_high_16 (Length: 485)
Name: NF15456_high_16
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 28 - 472
Target Start/End: Complemental strand, 5826767 - 5826323
Alignment:
| Q |
28 |
ttaccttggcttaatctttcttatatttcnnnnnnnggtaaaattgttaatcatttttacattgtaagcagatggtgctcttaatcatttagtaattagt |
127 |
Q |
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| T |
5826767 |
ttaccttggcttaatctttcttatatttctttttttggtaaaattgttaatcatttttacattgtaagcagatggtgctcttaatcatttagtaattagt |
5826668 |
T |
|
| Q |
128 |
gggatcaataatttttgcttctatnnnnnnnngtttctatttcaatttggccagcagcaatgtcctataatattgatacataaatcacacatgtaagaaa |
227 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
5826667 |
gggatcaataatttttgcttctataaaaaaaagtttctatttcaatttggccagcagcaatttcctataatattgatacataaatcgcacatgtaagaaa |
5826568 |
T |
|
| Q |
228 |
attaatacacctaatgatggtaaatttcannnnnnnnggggcagcaaggtagcctagagtaaatttcaataatataggaattaatatttcggctgaatta |
327 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
5826567 |
attaatacacctaatgatggtaaatttgattttttttggggcagcaaggtagcttagagtaaatttcaataatataggaattaatatttaggttgaatta |
5826468 |
T |
|
| Q |
328 |
aaaaggttaaattctaaaaaattcaggccttatctaaagagaatgatgaatggaccacttgtatacgtataattgtcttttgttacatatctatgttgtt |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5826467 |
aaaaggttaaattctaaaaaattcaggccttatctaaagagaatgatgaatggaccacttgtatacgtataattgtcttttgttacatatctatgttgtt |
5826368 |
T |
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| Q |
428 |
tgtctccgttggtttgcctcggacaactttcaccttcaccagttc |
472 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5826367 |
tgtctccgttggtttgcctcggacaactttcaccttcaccagttc |
5826323 |
T |
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