View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15456_high_19 (Length: 439)
Name: NF15456_high_19
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_high_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 46166938 - 46167337
Alignment:
| Q |
18 |
gtttgtctataggaaagcaagtattgtttttcagatgacacgttgccggatggatatagtgttacgaaaggtgatcttgtttcattccaaccatatgtca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46166938 |
gtttgtctataggaaagcaagtattgtttttcagatgacacgttgccggatggatatagtgttacgaaaggtgatcttgtttcattccaaccatatgtca |
46167037 |
T |
|
| Q |
118 |
tgggaaggatgaagttcttgtggggtgaagatgctgagcaattcagaccagagagatggcttgatgaaaatggaaattttcaaagagagagcccttttaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46167038 |
tgggaaggatgaagttcttgtggggtgaagatgctgagcaattcagaccagagagatggcttgatgaaaatggaaattttcaaagagagagcccttttaa |
46167137 |
T |
|
| Q |
218 |
gttcacagccttccaggtatgaacaacttaattaggtgcttgtcgtcgcataatcgcttatcatatacgtgcttctgtataagcaatttctaccactaga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46167138 |
gttcacagccttccaggtatgaacaacttaattaggcgcttgtcgtcgcataatcgcttatcatatacgtgcttctgtataagcaatttctaccactaga |
46167237 |
T |
|
| Q |
318 |
taaaatcaaattgtattcatataagctatatcatattttcataagctctttcaagcagtctcacaatatatctctatgtatctttactatcaatgtgatt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
46167238 |
taaaatcaaattgtattcatataagctatatcatattttcataagctctttcaaacagtctcacaatatatctctatgtaactttactatcaatgtgatt |
46167337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 46160076 - 46160340
Alignment:
| Q |
18 |
gtttgtctataggaaagcaagtattgtttttcagatgacacgttgccggatggatatagtgttacgaaaggtgatcttgtttcattccaaccatatgtca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| | |||||||||| |||||||||| |
|
|
| T |
46160076 |
gtttgtctataggaaagcaagtattgtttttcagatgacacgttgccggatggatatagtgtgaggaaaggtgattatatttcattccatccatatgtca |
46160175 |
T |
|
| Q |
118 |
tgggaaggatgaagttcttgtggggtgaagatgctgagcaattcagaccagagagatggcttgatgaaaatggaaattttcaaagagagagcccttttaa |
217 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
46160176 |
tgggaaggatggagttcttgtggggtgaagatgctgagcaattcagaccagagagatggcttgatgaaaatggaaattttcagagagaaagcccttttaa |
46160275 |
T |
|
| Q |
218 |
gttcacagccttccaggtatgaacaacttaattaggtgcttgtcgtcgcataatcgcttatcatatac |
285 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||| || ||||||||||||||||||||| |
|
|
| T |
46160276 |
gttcacagcctttcaggtatgaacaacttaattaggcgctt---gtagcataatcgcttatcatatac |
46160340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 199
Target Start/End: Original strand, 13023517 - 13023665
Alignment:
| Q |
51 |
gatgacacgttgccggatggatatagtgttacgaaaggtgatcttgtttcattccaaccatatgtcatgggaaggatgaagttcttgtggggtgaagatg |
150 |
Q |
| |
|
|||||||| || || |||||||||||||| | ||||| || | || |||| |||||| |||| ||||| |||||||| ||| | |||||||| |||| |
|
|
| T |
13023517 |
gatgacacattaccagatggatatagtgtaaaaaaaggagacatggtgtcataccaaccttatgcaatggggaggatgaaattcatatggggtgatgatg |
13023616 |
T |
|
| Q |
151 |
ctgagcaattcagaccagagagatggcttgatgaaaatggaaattttca |
199 |
Q |
| |
|
| ||| |||| ||||| || |||||||||||||||||||||| |||||| |
|
|
| T |
13023617 |
cagaggaatttagacctgaaagatggcttgatgaaaatggaatttttca |
13023665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 51 - 220
Target Start/End: Complemental strand, 13070405 - 13070236
Alignment:
| Q |
51 |
gatgacacgttgccggatggatatagtgttacgaaaggtgatcttgtttcattccaaccatatgtcatgggaaggatgaagttcttgtggggtgaagatg |
150 |
Q |
| |
|
|||||||| || || |||||||||||||| | ||||| || | || |||| |||||| |||| ||||| |||||||| ||| | |||||||| |||| |
|
|
| T |
13070405 |
gatgacacattaccagatggatatagtgtaaaaaaaggagacatggtgtcataccaaccttatgcaatggggaggatgaaattcatatggggtgatgatg |
13070306 |
T |
|
| Q |
151 |
ctgagcaattcagaccagagagatggcttgatgaaaatggaaattttcaaagagagagcccttttaagtt |
220 |
Q |
| |
|
| ||| |||| ||||| | |||||||| ||||||||||| |||||||| ||||| |||||| ||||| |
|
|
| T |
13070305 |
cagaggaatttagacctgcaagatggctggatgaaaatggcaattttcaggcagagaaccctttcaagtt |
13070236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 26516212 - 26516256
Alignment:
| Q |
265 |
gcataatcgcttatcatatacgtgcttctgtataagcaatttcta |
309 |
Q |
| |
|
|||||| ||||||||||||| |||||| ||||||||| ||||||| |
|
|
| T |
26516212 |
gcataagcgcttatcatataagtgcttatgtataagctatttcta |
26516256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University