View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15456_high_23 (Length: 422)
Name: NF15456_high_23
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_high_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 12 - 197
Target Start/End: Complemental strand, 14729969 - 14729785
Alignment:
| Q |
12 |
aaaaataaaatatgggtctaattcaaagaaaagggagaaaaataaggagtacggttcgtccttaccaaccgtctttttgtgcttgtgttcgtctcgtgaa |
111 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14729969 |
aaaaataaaatatgg-tctaattcaaagaaaagggagacaaataaggagtacggttcgtccttaccaaccgtctttttgtgctagtgttcgtctcgtgaa |
14729871 |
T |
|
| Q |
112 |
cattttaatttgcctcgtgaactaatgcacacaaagattattattagggttgcttcttctccattattaatgtgagaaaatgtttg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14729870 |
cattttaatttgcctcgtgaactaatgcacacaaagattattattagggttgcttcttctccattattaatgtgagaaaatgtttg |
14729785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 194 - 413
Target Start/End: Complemental strand, 14729429 - 14729200
Alignment:
| Q |
194 |
tttgacttggccaattgtgcaccaaaatatggcccacacaatta------gacaacaagtataagacagt--ccctnnnnnnn-cacgagaattcactcc |
284 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||| |||| || ||||||||||||| |
|
|
| T |
14729429 |
tttgacttggccaactgtgcaccaaaatatggcccacacaattaactatagacaacaagcataagacagtgtccctaaaaaaaacaagagaattcactcc |
14729330 |
T |
|
| Q |
285 |
tttaactcttctctccaagataccaactccaaaattataagaaaaattgatcaaattatgcatattaa-aaaatgtggttgtttacgtttaatctaagca |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
14729329 |
tttaactcttctctccaagataccaactccaaaattataagcaaaattgatcaaattatgcatattaaaaaaatgtgtttgtttacgtttaatctaagca |
14729230 |
T |
|
| Q |
384 |
attccaataaaaatttaagtctatcgccta |
413 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
14729229 |
attgcaataaaaatttaagtctatcgccta |
14729200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 405
Target Start/End: Original strand, 48937460 - 48937548
Alignment:
| Q |
317 |
aattataagaaaaattgatcaaattatgcatattaaaaaatgtggttgtttacgtttaatctaagcaattccaataaaaatttaagtct |
405 |
Q |
| |
|
|||||||| |||| ||||||||||| ||||||||| ||| | |||||| || |||| |||| ||||| |||||||||| |||||||| |
|
|
| T |
48937460 |
aattataaacaaaaatgatcaaattaagcatattaagaaagatagttgttcacatttattctatgcaatcccaataaaaaattaagtct |
48937548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University