View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_high_24 (Length: 414)
Name: NF15456_high_24
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 51320208 - 51320528
Alignment:
| Q |
18 |
gaagctattgcccaatcccctgttgctgctgccatagaaatacaccttttatatgttcctggatattttgaacttcatattatcattacattcccaaaca |
117 |
Q |
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| T |
51320208 |
gaagctattgcccaatcccctgttgctgctgccatagaaatacaccttttatatgttcctggatattttgaacttcatattatcattacattcccaaaca |
51320307 |
T |
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| Q |
118 |
tgtataaaaaggatccaataaaatttgacttaaaattaactaaacaaacgttgttgatagatgatgaggtcgcactacaaaaatagacatcaaggttcct |
217 |
Q |
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| T |
51320308 |
tgtataaaaaggatccaataaaatttgacttaaa-ttaactaaacaaacgttgttgatagatgatgaggtcgcactacaaaaatagacatcaaggttcct |
51320406 |
T |
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| Q |
218 |
gtgaaatatatatatagaaatacatacatacataggttgggatgttgttaaacaaacgtaccgtcctcaggagctgatgagggaatagtaattgaattgg |
317 |
Q |
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| T |
51320407 |
gtgaaatatatagata----tac----atacataggttgggatgttgttaaacaaacgtaccgtcctcaggagctgatgagggaatagtaattgaattgg |
51320498 |
T |
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| Q |
318 |
gatttgacataattaaactctggtggtatc |
347 |
Q |
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| T |
51320499 |
gatttgacataattaaactctggtggtatc |
51320528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 360 - 414
Target Start/End: Original strand, 51320553 - 51320607
Alignment:
| Q |
360 |
caatgaatctaaatgatggcccgttaagttatttgtacctaatgaatagtgtttc |
414 |
Q |
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| T |
51320553 |
caatgaatctaaatgatggcccgttaagttatttgtacctaatgaatagtgtttc |
51320607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 51344226 - 51344275
Alignment:
| Q |
29 |
ccaatcccctgttgctgctgccatagaaatacaccttttatatgttcctg |
78 |
Q |
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|||||||||| |||||||||||||| ||||| | ||||||||||||||| |
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| T |
51344226 |
ccaatccccttttgctgctgccatacaaataatctttttatatgttcctg |
51344275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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