View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_high_26 (Length: 387)
Name: NF15456_high_26
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 12 - 309
Target Start/End: Complemental strand, 1396262 - 1395965
Alignment:
| Q |
12 |
aagcataggacaccaaacgttcaagttacgtgagtctccaccaataagaatctccaagtaaacaaaaggtaaacgacccattttacaattcagaatggag |
111 |
Q |
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| T |
1396262 |
aagcataggacaccaaacgttcaagttacgtgagtctccaccaataagaatctccaagtaaacaaaaggtaaacgacccattttacaattcagaatgtag |
1396163 |
T |
|
| Q |
112 |
gcagcctctatcaactaagaatcaagaacgttgacacctactagcatactcttgtgaaaattaactttgagactcaagggcgcctcaagaaggtgaagca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1396162 |
gcagcctctatcaactaagaatcaagaacgttgacacctactagcatactcttgtgaaaattaactttgagactcaagggcgcctcaaaaaggtgaagca |
1396063 |
T |
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| Q |
212 |
aagcttttaaagctctaatattagcccaacttttaacaccaactaacaaagtattattagcaaattaaagatgagaaatagctagagacattatctta |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1396062 |
aagcttttaaagctctaatattagcccaacttttaacaccaactaacaaagtattatcagcaaattaaagatgagaaatagctagagacattatctta |
1395965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 309 - 372
Target Start/End: Complemental strand, 1395939 - 1395876
Alignment:
| Q |
309 |
agtccagccttcactaaagcatttatcatcacattgagaccctcagcagctattaagaagagga |
372 |
Q |
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| T |
1395939 |
agtccagccttcactaaagcatttatcatcacattgagatcctcagcagctattaagaagagga |
1395876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 23479485 - 23479445
Alignment:
| Q |
206 |
gaagcaaagcttttaaagctctaatattagcccaactttta |
246 |
Q |
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| T |
23479485 |
gaagcaaagcttttaaaactctaatattagccgaactttta |
23479445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 23479648 - 23479589
Alignment:
| Q |
43 |
gagtctccaccaataaga---atctccaagtaaacaaaaggtaaacgacccattttacaa |
99 |
Q |
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|||||||||||||||| | ||| ||||||||| |||||||||||||||||||||||| |
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| T |
23479648 |
gagtctccaccaataataggtatccccaagtaaaggaaaggtaaacgacccattttacaa |
23479589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 3544077 - 3544019
Alignment:
| Q |
231 |
attagcccaacttttaacaccaactaacaaagtattattagcaaattaaagatgagaaa |
289 |
Q |
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|||||||||||||||||| |||| ||||| ||||| || |||||||| |||||| |||| |
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| T |
3544077 |
attagcccaacttttaactccaagtaacagagtatcatcagcaaattgaagatgggaaa |
3544019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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