View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_high_28 (Length: 366)
Name: NF15456_high_28
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 20 - 344
Target Start/End: Complemental strand, 39825660 - 39825336
Alignment:
| Q |
20 |
tgactggttacaataacgagagtatgaatgaatgcacacaacatatatccttacaagtaacaatttaccaatactaggatttcgtaccggtttgagattg |
119 |
Q |
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| T |
39825660 |
tgactggttacaataaggagagtatgaatgaatgcacacaacatatatccttacatgtaacaatttaccaatactaggattgcgtaccggtttgagattg |
39825561 |
T |
|
| Q |
120 |
acatgataaatgccaatgccggaacttttgagtggagaataatcagaaccgtctagagcaacactccaaccataactatttttgaaatctggttttctat |
219 |
Q |
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| T |
39825560 |
acatgataaatgccaatgccataacttttgagtggagaataatcagaaccgtctagagcaacactccaaccataactatttttgaaatctggttttctat |
39825461 |
T |
|
| Q |
220 |
catagaggttgcaagagtgaggggatttgtgggtaactttgtcgtatttcttattttttatctcattgccaaatacagattccaataagttcctccaaga |
319 |
Q |
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| T |
39825460 |
catagaggttgcaagagtgaggggatttgtgggtaactttgtcgtatttcttattttttatctcattgccaaatacagattccaataagttcctccaaga |
39825361 |
T |
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| Q |
320 |
ccaacttgttatttgcattacttca |
344 |
Q |
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|||||||||| |||||||||||||| |
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| T |
39825360 |
ccaacttgttttttgcattacttca |
39825336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 75 - 344
Target Start/End: Complemental strand, 39805574 - 39805305
Alignment:
| Q |
75 |
agtaacaatttaccaatactaggatttcgtaccggtttgagattgacatgataaatgccaatgccggaacttttgagtggagaataatcagaaccgtcta |
174 |
Q |
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| T |
39805574 |
agtaaaaatttaacaatactaaaattgcgtactggtttgagattgacgtgataaatgccaatgccggaacttttgagtggagaatagtcagaaccgtcta |
39805475 |
T |
|
| Q |
175 |
gagcaacactccaaccataactatttttgaaatctggttttctatcatagaggttgcaagagtgaggggatttgtgggtaactttgtcgtatttcttatt |
274 |
Q |
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| T |
39805474 |
gagcaacactccaaccataactattttggaaatctggttttctatcatagaggttgcaagagtgaggggatttgtgggtaactttgtcgcatttattatt |
39805375 |
T |
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| Q |
275 |
ttttatctcattgccaaatacagattccaataagttcctccaagaccaacttgttatttgcattacttca |
344 |
Q |
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| T |
39805374 |
ttttatctcattgccaaatacagactccaataacttcctccaagaccaccttgttttttgcattacttca |
39805305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 102 - 343
Target Start/End: Complemental strand, 39927131 - 39926890
Alignment:
| Q |
102 |
cgtaccggtttgagattgacatgataaatgccaatgccggaacttttgagtggagaataatcagaaccgtctagagcaacactccaaccataactatttt |
201 |
Q |
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| T |
39927131 |
cgtaccggtttgagattgacgtgataaattccaacgccggaacttttaagtggtgaataatcagaaccgtccagagcaacactccaaccataactgtttt |
39927032 |
T |
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| Q |
202 |
tgaaatctggttttctatcatagaggttgcaagagtgaggggatttgtgggtaactttgtcgtatttcttattttttatctcattgccaaatacagattc |
301 |
Q |
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| T |
39927031 |
tgaaatctggttttctgtcatagaggttgcaagagcgaggggatttatgtgcaacattgtcctttttcatattttctatttcatctccaaatacagattc |
39926932 |
T |
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| Q |
302 |
caataagttcctccaagaccaacttgttatttgcattacttc |
343 |
Q |
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||||| |||||||||||||||||||| ||||| ||||||| |
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| T |
39926931 |
caatagcttcctccaagaccaacttgtcttttgctttacttc |
39926890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 102 - 343
Target Start/End: Complemental strand, 39910524 - 39910283
Alignment:
| Q |
102 |
cgtaccggtttgagattgacatgataaatgccaatgccggaacttttgagtggagaataatcagaaccgtctagagcaacactccaaccataactatttt |
201 |
Q |
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| T |
39910524 |
cgtaccggtttgagattgacgtgataaattccaacaccggaacttttaagtggtgaataatcagaaccgtctagagcaacactccaaccataactgttct |
39910425 |
T |
|
| Q |
202 |
tgaaatctggttttctatcatagaggttgcaagagtgaggggatttgtgggtaactttgtcgtatttcttattttttatctcattgccaaatacagattc |
301 |
Q |
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| T |
39910424 |
tgaaatctggttttctgtcatagaggttgcaagagcgaggggatttatgtgcaaccttgtcctttttaatattttctatttcatttccaaatacagattc |
39910325 |
T |
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| Q |
302 |
caataagttcctccaagaccaacttgttatttgcattacttc |
343 |
Q |
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| T |
39910324 |
caatagcttcctccaagaccaacttgtcttttgctttacttc |
39910283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 102 - 343
Target Start/End: Complemental strand, 39921843 - 39921602
Alignment:
| Q |
102 |
cgtaccggtttgagattgacatgataaatgccaatgccggaacttttgagtggagaataatcagaaccgtctagagcaacactccaaccataactatttt |
201 |
Q |
| |
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|||||||||||||||||||| |||||||| |||| |||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| || | |
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| T |
39921843 |
cgtaccggtttgagattgacgtgataaattccaacgccggaacttttaagtggtgaataatcagaaccatctagagcaacactccaaccataactgttct |
39921744 |
T |
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| Q |
202 |
tgaaatctggttttctatcatagaggttgcaagagtgaggggatttgtgggtaactttgtcgtatttcttattttttatctcattgccaaatacagattc |
301 |
Q |
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| T |
39921743 |
tgaaatctggttttctgtcatagaggttgcaagagcgaggggatttatgtgcaaccttgtcctttttcatattttctatttcacctccaaatacagattc |
39921644 |
T |
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| Q |
302 |
caataagttcctccaagaccaacttgttatttgcattacttc |
343 |
Q |
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||||| ||||||||||||||||||||| ||||| ||||||| |
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| T |
39921643 |
caatagcttcctccaagaccaacttgttttttgctttacttc |
39921602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 56 - 343
Target Start/End: Complemental strand, 39902221 - 39901934
Alignment:
| Q |
56 |
cacaacatatatccttacaagtaacaatttaccaatactaggatttcgtaccggtttgagattgacatgataaatgccaatgccggaacttttgagtgga |
155 |
Q |
| |
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|||||| |||||| || ||| ||| ||||| ||||| |||| | ||||||||||| ||||||||||| ||||| |||||||| |||||||| ||||| |
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| T |
39902221 |
cacaacctatatcattgcaaataaacatttaacaataataggctagcgtaccggtttaagattgacatggtaaattccaatgccagaacttttaagtggt |
39902122 |
T |
|
| Q |
156 |
gaataatcagaaccgtctagagcaacactccaaccataactatttttgaaatctggttttctatcatagaggttgcaagagtgaggggatttgtgggtaa |
255 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||| |||||||||||||||||| |||||||||| || | || |
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| T |
39902121 |
gaataatcagaaccgtctagagaaacactccaaccataactgttcttgaaatctggttttctgtcatagaggttgcaagagcgaggggatttatgtgcaa |
39902022 |
T |
|
| Q |
256 |
ctttgtcgtatttcttattttttatctcattgccaaatacagattccaataagttcctccaagaccaacttgttatttgcattacttc |
343 |
Q |
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| T |
39902021 |
ccttgtcctttttcatattttttatttcatctccaaatactgattccaaaagctccctccaagaccaacttgttttttgctttacttc |
39901934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 102 - 343
Target Start/End: Complemental strand, 39814066 - 39813825
Alignment:
| Q |
102 |
cgtaccggtttgagattgacatgataaatgccaatgccggaacttttgagtggagaataatcagaaccgtctagagcaacactccaaccataactatttt |
201 |
Q |
| |
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|||||||||||||||||||| |||||||| |||| |||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||| || | |
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| T |
39814066 |
cgtaccggtttgagattgacgtgataaattccaacgccggaacttttaagtggtgaataatcagaaccgtctagagaaacactccaaccataactgttct |
39813967 |
T |
|
| Q |
202 |
tgaaatctggttttctatcatagaggttgcaagagtgaggggatttgtgggtaactttgtcgtatttcttattttttatctcattgccaaatacagattc |
301 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| |||||||||| || | ||| ||||| | |||| |||||| ||| |||| |||||||||||||| |
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| T |
39813966 |
tgaaatctggttttctgtcatagaggttgcaagagcgaggggatttatgtgcaaccttgtcctttttcatattttctatttcatctccaaatacagattc |
39813867 |
T |
|
| Q |
302 |
caataagttcctccaagaccaacttgttatttgcattacttc |
343 |
Q |
| |
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||| | |||||||||| |||| ||||| ||||| ||||||| |
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| T |
39813866 |
caaaagcttcctccaaggccaatttgttgtttgctttacttc |
39813825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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