View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15456_high_31 (Length: 328)
Name: NF15456_high_31
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_high_31 |
 | |
|
| [»] scaffold1315 (1 HSPs) |
| | |
|
| [»] scaffold1293 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 112 - 310
Target Start/End: Original strand, 43439377 - 43439572
Alignment:
| Q |
112 |
atagcaaacaagttttaacttaaacttatcatttacaggagatctctccgtaaattgattctccgcccattctattgccatgtgcaaaatcaggagcttg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43439377 |
atagcaaacaagttttaacttaaacttatcatttacaggagatctctccgtaaattgattctccgcccattctatcgccatgtgcaaaatcaggagcttg |
43439476 |
T |
|
| Q |
212 |
gtaaaatcctatggaatgagctacccttgtaagaaagcaccatttttaaagcaagcaaataaaaccagcattgtgtaattggtgtgtaaatacgtgaag |
310 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43439477 |
g---aatcctatggaatgagctacccctgtaagaaagcaccatttttaaagcaagcaaataaaaccagcattgtgtaattggtgtgtaaatacttgaag |
43439572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 18952831 - 18952878
Alignment:
| Q |
1 |
aaaaatgaatttgaataagagatgaatgataagaagaaaaactaagga |
48 |
Q |
| |
|
||||| ||||||||| | |||| ||||||||||||||||||||||||| |
|
|
| T |
18952831 |
aaaaaggaatttgaacatgagaggaatgataagaagaaaaactaagga |
18952878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1315 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold1315
Description:
Target: scaffold1315; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 1104 - 996
Alignment:
| Q |
1 |
aaaaatgaatttgaataagagatgaatgataagaagaaaaactaaggagagtgtgttttataattgacaatataattaatagaatgagttgctgataatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1104 |
aaaaatgaatttgaataagagatgaatgataagaagaaaaactaaggagagtgtgttttatcattgacaatataattaataaaatgagttgctgataatt |
1005 |
T |
|
| Q |
101 |
tatgatttt |
109 |
Q |
| |
|
||||||||| |
|
|
| T |
1004 |
tatgatttt |
996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 42757072 - 42757180
Alignment:
| Q |
1 |
aaaaatgaatttgaataagagatgaatgataagaagaaaaactaaggagagtgtgttttataattgacaatataattaatagaatgagttgctgataatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42757072 |
aaaaatgaatttgaataagagatgaatgataagaagaaaaactaagaagagtgtgttttatcattgacaatataattaatagaatgagttgctgataatt |
42757171 |
T |
|
| Q |
101 |
tatgatttt |
109 |
Q |
| |
|
||||||||| |
|
|
| T |
42757172 |
tatgatttt |
42757180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1293 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold1293
Description:
Target: scaffold1293; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 967 - 1075
Alignment:
| Q |
1 |
aaaaatgaatttgaataagagatgaatgataagaagaaaaactaaggagagtgtgttttataattgacaatataattaatagaatgagttgctgataatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
967 |
aaaaatgaatttgaataagagatgaatgataagaagaaaaactaagaagagtgtgttttatcattgacaatataattaataaaatgagttgctgataatt |
1066 |
T |
|
| Q |
101 |
tatgatttt |
109 |
Q |
| |
|
||||||||| |
|
|
| T |
1067 |
tatgatttt |
1075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 6466751 - 6466646
Alignment:
| Q |
1 |
aaaaatgaatttgaataagagatgaatgataa-gaagaaaaactaaggagagtgtgttttataattgacaatataattaatagaatgagttgctgataat |
99 |
Q |
| |
|
||||| ||||||||| | |||| ||||||||| ||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
6466751 |
aaaaaggaatttgaacatgagaagaatgataaagaagaaaaattaaggagggtgtgttttatatgtgacaatataattaatagaatgagttgcagataat |
6466652 |
T |
|
| Q |
100 |
ttatga |
105 |
Q |
| |
|
|||||| |
|
|
| T |
6466651 |
ttatga |
6466646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 25642653 - 25642702
Alignment:
| Q |
154 |
tctctccgtaaattgattctccgcccattctattgccatgtgcaaaatca |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
25642653 |
tctctccgtaaattgattctccgcccattccattgccatgtgtaaaatca |
25642702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University