View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_high_35 (Length: 318)
Name: NF15456_high_35
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 307
Target Start/End: Complemental strand, 21648799 - 21648512
Alignment:
| Q |
20 |
cctacgtctctaactataagcctcatttgaagaatataaattcatatgtaatttatactaggttatttattatttttgttctcaaacatacattttataa |
119 |
Q |
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| T |
21648799 |
cctacgtctctaactataagcctcatttgaagaatataaattcatatgtaatttatactaggttatttattatttttgttctcaaacatacattttataa |
21648700 |
T |
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| Q |
120 |
atattactaatttcttttgaaatttgaaaagttaaagttacatactaataaaccaagagtaattttgaaagatcaaatacgagacattaaatttactaac |
219 |
Q |
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| T |
21648699 |
atattactaatttcttttgaaatttgagaagttaaagttacatactaataaaccaagagtacttttgaaagatcaaatacgagacattaaatttactaac |
21648600 |
T |
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| Q |
220 |
cacttttgtaatatatgtgaaaaaagtcatgggtgcttttaataaggcatgaagttttcaaattcaaatttacattcttttgtttcat |
307 |
Q |
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| T |
21648599 |
cacttttttaatatatgtgaaaaaagtcatgggtgcttttaataaggcatgaagttttcaaattcaaatttacattcttttgtttcat |
21648512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 32649455 - 32649512
Alignment:
| Q |
98 |
ttctcaaacatacattttataaatattactaatttcttttgaaatttgaaaagttaaa |
155 |
Q |
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||||||||||||| |||||| |||| || ||||| | |||||||||||||||||||| |
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| T |
32649455 |
ttctcaaacatactttttattaatactattaattcatcttgaaatttgaaaagttaaa |
32649512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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