View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_high_52 (Length: 259)
Name: NF15456_high_52
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_high_52 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 3808000 - 3807771
Alignment:
| Q |
18 |
acctttcacatggacctaaccatttagcttccatgtacttatgcctcctccatggccccatatgcaactttttatccttcatgcattttttggctgccat |
117 |
Q |
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| T |
3808000 |
acctttcacatggacctaaccatttagcttccatgtacttatgcctcctccatggccccatatgcaactttttatccttcatgcattttttggctgccat |
3807901 |
T |
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| Q |
118 |
gcataagattttgattaacttgctcattctccctacttctccaacaaacacttcaggtaccttcttaaccaagttgttgtattcatcacttccttttgcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3807900 |
gcataagattttgattaacttgctcattctccctacttctccaacaaacacttcaggtaccttcttaaccaagttgttgtattcatcacttccttttgcc |
3807801 |
T |
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| Q |
218 |
atctcaaactcagcttggaagttcatctca |
247 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
3807800 |
atctcaaactcagcttggaagttcatctca |
3807771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 3776293 - 3776065
Alignment:
| Q |
19 |
cctttcacatggacctaaccatttagcttccatgtacttatgcctcctccatggccccatatgcaactttttatccttcatgcattttttggctgccatg |
118 |
Q |
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| T |
3776293 |
cctttcacatggacctaaccatttagcttgcatgtacctatgcttcctccatggccccatgtgcatttttttatccttcatgcattttttggctgcattg |
3776194 |
T |
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| Q |
119 |
cataagattttgattaacttgctcattctccctacttctccaacaaacacttcaggtaccttcttaaccaagttgttgtattcatcacttccttttgcca |
218 |
Q |
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| T |
3776193 |
cataatattttgattaggtttcccaatctctctactttccctacaaacacttcaggcagcttctggacaagtttgttgtattcatcacttccccttgcca |
3776094 |
T |
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| Q |
219 |
tctcaaactcagcttggaagttcatctca |
247 |
Q |
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| T |
3776093 |
tctcaaactcagcttggaaattcagctca |
3776065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 35365032 - 35365088
Alignment:
| Q |
27 |
atggacctaaccatttagcttccatgtacttatgcctcctccatggccccatatgca |
83 |
Q |
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||||||||||||||||||||| |||||| ||||| | |||||||| |||||||||| |
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| T |
35365032 |
atggacctaaccatttagcttgcatgtatttatgttttctccatggtcccatatgca |
35365088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 35373148 - 35373204
Alignment:
| Q |
27 |
atggacctaaccatttagcttccatgtacttatgcctcctccatggccccatatgca |
83 |
Q |
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||||||||||||||||||||| |||||| ||||| | |||||||| ||||| |||| |
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| T |
35373148 |
atggacctaaccatttagcttgcatgtatttatgttttctccatggtcccatgtgca |
35373204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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