View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_high_6 (Length: 608)
Name: NF15456_high_6
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 17 - 594
Target Start/End: Complemental strand, 29099152 - 29098579
Alignment:
| Q |
17 |
aattccttccttgccgataacaaaatcaatcactcgcggttggaattcgtgttcaatgatccatcgcgcggcgtaacaaatttgttcaattatcattttc |
116 |
Q |
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| T |
29099152 |
aattccttccttgccgataacaaaatcaatcactggcggtcggaattcgtgttcaatc-tccatcgcgcggtgtaacaaatttgttcaattatcattttc |
29099054 |
T |
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| Q |
117 |
ttcaacacgcgatcgcactaacaagagtaatctcttcaaggtttaatctactgaaaaggatcatgttcaagttgtagagggaagaagtggtgttgatgag |
216 |
Q |
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| T |
29099053 |
ttcaacacgcgatcgcactaacaagagtaatctcttcaaggttttatctactgaaaaggatcatgttcaagttgtagagggaag---tggtgttgatgag |
29098957 |
T |
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| Q |
217 |
atatatgagacattggttaaacgaattctgcctccagcgtcaatgtcgttaaatcctaattataaattttttgttggcctggctggtccacctggtgctg |
316 |
Q |
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| T |
29098956 |
atatatgatacattggttaaacgaattctgcctccagcgtcaatgtcgttaaatcctaattataaagtttttgttggcctggctggtccacctggtgctg |
29098857 |
T |
|
| Q |
317 |
gaaaaagcaccatagcgcatgaagtagccaaacgcataaacaagctttggccagagaaagcttcttcctttgactctcaggttcaacctcctgacgttgc |
416 |
Q |
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| T |
29098856 |
gaaaaagcaccatagcgcatgaagtagccaaacgcataaacaagctttggccagagaaaacttcttcctttgactctcaggttcaacctcctgatgttgc |
29098757 |
T |
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| Q |
417 |
tattgtgattcccatggatggttttcatctttatcgttctgaactagatgctatgaagaatcctgaggaagcaaatgccagaaggggagctccatggaca |
516 |
Q |
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| T |
29098756 |
tattgtgattcgcatggatggttttcatctttatcgttctgaactagatgctatgaagaatcccgaggaagcacatgccagaaggggagctccatggaca |
29098657 |
T |
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| Q |
517 |
ttcaatcccacgcgactacttacctgtctcaagaatgtgagagtccatggatcagtttatgcaccatcatttgaccat |
594 |
Q |
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| T |
29098656 |
ttcaatcccacgcgactacttacctgtctcaagaatgtgagagtccatggatcagtttatgcaccatcatttgaccat |
29098579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 282 - 474
Target Start/End: Complemental strand, 38537975 - 38537783
Alignment:
| Q |
282 |
attttttgttggcctggctggtccacctggtgctggaaaaagcaccatagcgcatgaagtagccaaacgcataaacaagctttggccagagaaagcttct |
381 |
Q |
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| T |
38537975 |
attttttgttggcctggctggtccacctggtgctggaaaaagcaccatagcgcatgaagtagccaaacgcataaacaagctttggccagagaaagcttct |
38537876 |
T |
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| Q |
382 |
tcctttgactctcaggttcaacctcctgacgttgctattgtgattcccatggatggttttcatctttatcgttctgaactagatgctatgaag |
474 |
Q |
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| T |
38537875 |
tcctttgactctcaggttcaacctcctgacgttgctattgtgattcccatggatggttttcatctttatcgttctgaactagatgctttgaag |
38537783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 202 - 281
Target Start/End: Complemental strand, 38538255 - 38538176
Alignment:
| Q |
202 |
agtggtgttgatgagatatatgagacattggttaaacgaattctgcctccagcgtcaatgtcgttaaatcctaattataa |
281 |
Q |
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| T |
38538255 |
agtggtgttgatgagatatatgatacattggttaaacgaattatgcctccagcgtcagtgtcgttaaatcctaattataa |
38538176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 38538662 - 38538567
Alignment:
| Q |
27 |
ttgccgataacaaaatcaatcactcgcggttggaattcgtgttcaatgatccatcgcgcggcgtaacaaatttgttcaattatcattttcttcaaca |
123 |
Q |
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| T |
38538662 |
ttgccgataacaaaatcaatcactcgcgatcggaatccgtgttcact-ctccatcgcgccgcgtaacaaatccgcgcaattatcattttcttcaaca |
38538567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 504 - 565
Target Start/End: Complemental strand, 38537258 - 38537197
Alignment:
| Q |
504 |
agctccatggacattcaatcccacgcgactacttacctgtctcaagaatgtgagagtccatg |
565 |
Q |
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| T |
38537258 |
agctccatggacattcaatcctacgcgactgcttacctgtctcaagaatctgagagttcatg |
38537197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 38538371 - 38538326
Alignment:
| Q |
155 |
aggtttaatctactgaaaaggatcatgttcaagttgtagagggaag |
200 |
Q |
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|||||| |||| ||||| | |||||||||||||||||||||||||| |
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| T |
38538371 |
aggttttatcttctgaagaagatcatgttcaagttgtagagggaag |
38538326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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