View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_high_7 (Length: 569)
Name: NF15456_high_7
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 1e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 357 - 551
Target Start/End: Complemental strand, 10095196 - 10095002
Alignment:
| Q |
357 |
atccggctagtatttacatgtctataaatataataattatttttggaacgatatgatgttctttcctatgttaagatgaacattttgtcaaccatgtcca |
456 |
Q |
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| T |
10095196 |
atccagctagtatttacatgtctataaatataataattatttttggaacgatatgatgttctttcctatgttaagatgaacattttgtcaactatgtcca |
10095097 |
T |
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| Q |
457 |
ttaatgttttgaccaaagctaacaataaaattttagctaaaatgatgattgaattctctttactttacaatagtttcaatttgagtatgttcaaa |
551 |
Q |
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| T |
10095096 |
ttaatgttttgaccaaagctaacaataaaattttatctaaaatgatgattgaattctctttactttacaatagtttcaatttgagtatgttcaaa |
10095002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 151 - 310
Target Start/End: Complemental strand, 10095355 - 10095196
Alignment:
| Q |
151 |
cacagcagtaataataaatatatcatgttacaagagtatataatttttcaactttgtagaaattcatccttgttttgtggaagataagtttaaagaatag |
250 |
Q |
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| T |
10095355 |
cacagcagtaataataaatatatcatgttacaagagtatataatttttcaactttgtagaaattcatctttgttttgtggaagataagtttaaagaatag |
10095256 |
T |
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| Q |
251 |
ttatgtcttgagaatatttgataaatatgannnnnnnngtttcttgagcattatgattta |
310 |
Q |
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| T |
10095255 |
ttatgtcttgagaatatttgatcaatatgattttttttgtttcttgagcattatgattta |
10095196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 10095443 - 10095391
Alignment:
| Q |
65 |
agattcttcctatgttaaacacaaaaacatggtcataggtttcatcaaaattg |
117 |
Q |
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| T |
10095443 |
agattcttcctatgttaaacacataaacatagtcataggtttcatcaaaattg |
10095391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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