View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15456_low_10 (Length: 540)

Name: NF15456_low_10
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15456_low_10
NF15456_low_10
[»] chr7 (4 HSPs)
chr7 (18-540)||(1344818-1345349)
chr7 (358-472)||(1102852-1102966)
chr7 (18-272)||(1716520-1716771)
chr7 (258-344)||(1103033-1103119)
[»] chr4 (4 HSPs)
chr4 (194-539)||(53469716-53470072)
chr4 (194-297)||(13816904-13817009)
chr4 (194-299)||(32015122-32015229)
chr4 (22-71)||(53469541-53469590)
[»] chr1 (3 HSPs)
chr1 (238-473)||(24284609-24284844)
chr1 (194-304)||(24272702-24272813)
chr1 (18-71)||(7155031-7155084)
[»] chr2 (6 HSPs)
chr2 (194-301)||(10128458-10128567)
chr2 (238-306)||(37965589-37965658)
chr2 (250-301)||(15140725-15140777)
chr2 (194-301)||(8761235-8761345)
chr2 (243-300)||(29905717-29905775)
chr2 (18-71)||(37965170-37965223)
[»] chr6 (3 HSPs)
chr6 (19-71)||(14721901-14721951)
chr6 (18-67)||(16909988-16910037)
chr6 (194-304)||(22880032-22880144)
[»] chr3 (1 HSPs)
chr3 (238-303)||(31141359-31141425)


Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 540
Target Start/End: Complemental strand, 1345349 - 1344818
Alignment:
Q  18 aatagtaaaagatagaataaaaaacgacacaagatttaacgaagtatccaacaacgtttttactaatctacaggcagagtcattgnnnnnnnttacacta 117  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || ||||||||||||| ||||||||||||       ||||||||    
T  1345349 aatagtaaaagatagaataaaaaacgacacaagattgaacgtagtatccaacaacattcttactaatctacatgcagagtcattgaaaaaaattacacta 1345250  T
Q  118 taatcaatgataatagatactgaatagtagaagtaataccagcaatagcaaaactcgctcactattaactattggtgaaatactaatacacaagatcctt 217  Q
    ||||| ||||| | | |||||||||||||||||||||| |||||||||||| ||||| | |||||||||||||||||||||||||| |||||||||| ||    
T  1345249 taatcgatgattacatatactgaatagtagaagtaatatcagcaatagcaagactcgttaactattaactattggtgaaatactaacacacaagatcttt 1345150  T
Q  218 atttatatgatcaagtcttacatatttcttcttattctttgatgtgagactttttctaacactaattcaagacatatttcaacaaatctccaccttgact 317  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1345149 atttatatgatcaagtcttacatatttcttcttattcttcgatgtgagactttttctaacactaattcaagacatatttcaacaaatctccaccttgact 1345050  T
Q  318 tgaatcctctccggataatcagatgc---------actcgaagtaccagatgtgccaaatgcattacattgaatgctcatatgggcctgctttgcctcag 408  Q
    ||||||||||||| ||||||||||||         ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1345049 tgaatcctctccgaataatcagatgcaccagatgtactcgaattaccagatgtgccaaatgcattacattgaatgctcatatgggcctgctctgcctcag 1344950  T
Q  409 gccttgcccctctgagggcaatcaacgacttctatcattgagctagttcaaacaatgttgaaactcgttgtgcagaaccggcttggtaaacttatcggct 508  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  | ||| ||||| ||||||||||||||||||||    
T  1344949 gccttgcccctctgagggcaatcaacgacttctatcattgaactagttcaaacaatgttgaaactcactctgcggaaccagcttggtaaacttatcggct 1344850  T
Q  509 ggggtagctgatgtatccaccttgtttacctt 540  Q
    ||  |  ||||||||||||| |||||||||||    
T  1344849 ggattgtctgatgtatccactttgtttacctt 1344818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 358 - 472
Target Start/End: Complemental strand, 1102966 - 1102852
Alignment:
Q  358 atgtgccaaatgcattacattgaatgctcatatgggcctgctttgcctcaggccttgcccctctgagggcaatcaacgacttctatcattgagctagttc 457  Q
    |||||||| ||||||||||  |||||  || ||| ||||||| ||||||||||||||||||||  |||||||||||| ||||||| |||||||| |||||    
T  1102966 atgtgccagatgcattacacagaatgtccagatgagcctgctctgcctcaggccttgcccctcccagggcaatcaacaacttctaacattgagcaagttc 1102867  T
Q  458 aaacaatgttgaaac 472  Q
    ||||||| |||||||    
T  1102866 aaacaatattgaaac 1102852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 1716520 - 1716771
Alignment:
Q  18 aatagtaaaagatagaataaaaaacgacacaagatttaacgaagtatccaacaacgtttttactaatctacaggcagagtcattgnnnnnnnttacacta 117  Q
    |||||||||||| ||||||||||  |||| ||||||||||| |||||||||||| || || |||||| | | || ||||| ||||       || |||||    
T  1716520 aatagtaaaagacagaataaaaat-gacataagatttaacgtagtatccaacaatgtgttgactaattttcgggtagagttattgaaaagaattccacta 1716618  T
Q  118 taatcaatgataatagatactgaatagtagaagtaataccagcaatagcaaaactcgctcactattaactattggtgaaatactaatacacaagatcctt 217  Q
    ||||| || || ||| ||||||||||||||| ||||||||||| |||  ||||||| || |||||| |   |    |||||| ||| |||||||| | ||    
T  1716619 taatcgattatcatatatactgaatagtagaggtaataccagctataaaaaaactcactaactattga---tgcaagaaatattaacacacaagaccttt 1716715  T
Q  218 atttatatgatcaagtc-ttacatatttcttcttattctttgatgtgagacttttt 272  Q
    ||||||||| ||||||| |||||||||| ||| ||||||| ||||||||| |||||    
T  1716716 atttatatggtcaagtctttacatattttttcatattcttcgatgtgagaattttt 1716771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 258 - 344
Target Start/End: Complemental strand, 1103119 - 1103033
Alignment:
Q  258 gatgtgagactttttct-aacactaattcaagacatatttcaacaaatctccaccttgacttgaatcctctccggataatcagatgca 344  Q
    |||||||||| |||||  |||||||||||||| ||||||||| |||||||||||||||||||||||| ||||| | ||| ||||||||    
T  1103119 gatgtgagacattttcccaacactaattcaaggcatatttca-caaatctccaccttgacttgaatcttctccaggtaaccagatgca 1103033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 194 - 539
Target Start/End: Original strand, 53469716 - 53470072
Alignment:
Q  194 gaaatactaatacacaagatccttatttatatgatcaagtctta-catatttcttcttattctttgatgtgagactttttct-aacactaattcaagaca 291  Q
    |||||||||| ||||||||   |||||||||||| ||||||||  ||||||||||| |||| | ||||||   || |||||  |||| ||||| ||| ||    
T  53469716 gaaatactaacacacaagacttttatttatatgaccaagtctttgcatatttcttcatattatctgatgtagaacattttcccaacattaattaaaggca 53469815  T
Q  292 tatttcaacaaatctccaccttgacttgaatcctctccggataatcagatgcac---------tcgaagtaccagatgtgccaaatgcattacattgaat 382  Q
    |||||||||||||||||| | ||||||||||| ||||| ||||| |||||||||         | || |||||||||||| || ||||||||||  ||||    
T  53469816 tatttcaacaaatctccatcgtgacttgaatcttctcctgataaccagatgcaccagatgcacttgacgtaccagatgtggcagatgcattacacagaat 53469915  T
Q  383 gctcatatgggcctgctttgcctcaggccttgcccctctgagggcaatcaacgacttctatcattgagctagttcaaacaatgttgaaactcgttgtgca 482  Q
    || || ||| |||| || ||||||||||||||||||||  |||||||||||| ||||||| |||||||| |||||||||||||||||| || | | | |     
T  53469916 gcccagatgagcctactctgcctcaggccttgcccctcctagggcaatcaacaacttctaacattgagcaagttcaaacaatgttgaatcttgctctacg 53470015  T
Q  483 gaaccggcttggtaaacttatcggctggggtagctgatgtatccaccttgtttacct 539  Q
    ||||||||||||||||| |||| | |||| |  ||| |||| |||| ||||||||||    
T  53470016 gaaccggcttggtaaacatatcagttgggttgtctgttgtacccactttgtttacct 53470072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 194 - 297
Target Start/End: Complemental strand, 13817009 - 13816904
Alignment:
Q  194 gaaatactaatacacaagatccttatttatatgatcaagtctta-catatttcttcttattctttgatgtgagacttttt-ctaacactaattcaagaca 291  Q
    |||||| ||| ||| ||| || |||||||||||| ||||||||  ||||||||||| ||||||| ||||||||||||||| | |||| ||||||||  ||    
T  13817009 gaaataataacacataaggtctttatttatatgaccaagtcttcgcatatttcttcatattcttcgatgtgagactttttcccaacattaattcaatgca 13816910  T
Q  292 tatttc 297  Q
    ||||||    
T  13816909 tatttc 13816904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 299
Target Start/End: Complemental strand, 32015229 - 32015122
Alignment:
Q  194 gaaatactaatacacaagatccttatttatatgatcaagtctta-catatttcttcttattctttgatgtgagactttttct-aacactaattcaagaca 291  Q
    |||||||||| |||||| | | |||||||| |   ||||||||  ||||| ||||| |||| ||| ||||||||||||||   |||||||||||||||||    
T  32015229 gaaatactaacacacaaaacctttatttatgttgccaagtctttgcatatatcttcctattattttatgtgagacttttttacaacactaattcaagaca 32015130  T
Q  292 tatttcaa 299  Q
    ||||||||    
T  32015129 tatttcaa 32015122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 53469541 - 53469590
Alignment:
Q  22 gtaaaagatagaataaaaaacgacacaagatttaacgaagtatccaacaa 71  Q
    |||||||| ||||| ||||||||||||| ||||||||  |||||||||||    
T  53469541 gtaaaagacagaatgaaaaacgacacaaaatttaacgtggtatccaacaa 53469590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 238 - 473
Target Start/End: Complemental strand, 24284844 - 24284609
Alignment:
Q  238 catatttcttcttattctttgatgtgagactttttct-aacactaattcaagacatatttcaacaaatctccaccttgacttgaatcctctccggataat 336  Q
    ||||||| ||| |||||| ||||||| |||||||||  || | ||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||     
T  24284844 catatttgttcatattctctgatgtgggactttttcccaatattaattcaaggcatatttcaacaaatttccaccttgacttgaatcctctccagataac 24284745  T
Q  337 cagatgcactcgaa-gtaccagatgtgccaaatgcattacattgaatgctcatatgggcctgctttgcctcaggccttgcccctctgagggcaatcaacg 435  Q
    |||   ||| |||| ||||  || || ||| | ||||||||   ||| | |||||| | ||||| ||||| ||||||||||||||   ||| |||||||     
T  24284744 caggaacac-cgaatgtactcgaagtaccagaagcattacacaaaatacccatatgagtctgctctgccttaggccttgcccctc-atgggaaatcaaca 24284647  T
Q  436 acttctatcattgagctagttcaaacaatgttgaaact 473  Q
     |||||| |||||||| |||||||||||||||||||||    
T  24284646 gcttctaacattgagcaagttcaaacaatgttgaaact 24284609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 194 - 304
Target Start/End: Complemental strand, 24272813 - 24272702
Alignment:
Q  194 gaaatactaatacacaagatccttatttatatgatcaagtctta-catatttcttcttattctttgatgtgagactttttctaacactaattcaagacat 292  Q
    |||||||||| |||||||  | |||| |||||  |||||||||  ||||||||||| || |||  ||||||||| |||||| ||||||||||||||||||    
T  24272813 gaaatactaacacacaaggcctttatatatattgtcaagtctttgcatatttcttcatactctacgatgtgagattttttccaacactaattcaagacat 24272714  T
Q  293 atttcaacaaat 304  Q
    ||||||||||||    
T  24272713 atttcaacaaat 24272702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 7155031 - 7155084
Alignment:
Q  18 aatagtaaaagatagaataaaaaacgacacaagatttaacgaagtatccaacaa 71  Q
    |||||||||||||| ||||||||||||||  |||||||||   |||||||||||    
T  7155031 aatagtaaaagatacaataaaaaacgacaagagatttaacatggtatccaacaa 7155084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 194 - 301
Target Start/End: Complemental strand, 10128567 - 10128458
Alignment:
Q  194 gaaatactaatacacaagatccttatttatatgatcaagtcttac-atatttcttcttattctttgatgtgagac-tttttctaacactaattcaagaca 291  Q
    |||||||||| ||||||||   |||||||||||| |||||||| | |||||||||| ||||||  ||||||  |  |||||| |||||||||||| ||||    
T  10128567 gaaatactaacacacaagacttttatttatatgaccaagtctttccatatttcttcatattctccgatgtggaatatttttccaacactaattcaggaca 10128468  T
Q  292 tatttcaaca 301  Q
    ||||||||||    
T  10128467 tatttcaaca 10128458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 37965589 - 37965658
Alignment:
Q  238 catatttcttcttattctttgatgtgagactttttct-aacactaattcaagacatatttcaacaaatct 306  Q
    ||||||||||| |||| |  |||||||||| |||||  |||||||||||||| |||||||||||||||||    
T  37965589 catatttcttcatattatccgatgtgagacattttcccaacactaattcaaggcatatttcaacaaatct 37965658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 301
Target Start/End: Complemental strand, 15140777 - 15140725
Alignment:
Q  250 tattctttgatgtgagac-tttttctaacactaattcaagacatatttcaaca 301  Q
    |||| ||||||||| ||| |||||| |||||||||||||||||||||||||||    
T  15140777 tattatttgatgtgggacatttttccaacactaattcaagacatatttcaaca 15140725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 301
Target Start/End: Original strand, 8761235 - 8761345
Alignment:
Q  194 gaaatactaatacacaagatccttatttatatgatcaa-gtctta-catatttcttcttattctttgatgtgagactttttct-aacactaattcaagac 290  Q
    |||||||||| ||||||||   |||||||||||| ||| || ||  ||||||||||| |||| | ||||||| ||| |||||  ||||| ||||||||||    
T  8761235 gaaatactaacacacaagacttttatttatatgaccaaagtatttgcatatttcttcatattatctgatgtgggacattttcccaacacaaattcaagac 8761334  T
Q  291 atatttcaaca 301  Q
    |||||||||||    
T  8761335 atatttcaaca 8761345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 29905717 - 29905775
Alignment:
Q  243 ttcttcttattctttgatgtgagacttttt-ctaacactaattcaagacatatttcaac 300  Q
    ||||||||||||| | |||||||||||||| || |||||||||||||  ||||||||||    
T  29905717 ttcttcttattctcttatgtgagactttttccttacactaattcaaggtatatttcaac 29905775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 37965170 - 37965223
Alignment:
Q  18 aatagtaaaagatagaataaaaaacgacacaagatttaacgaagtatccaacaa 71  Q
    |||||||||||| | |||  |||||||||||||||||||||  |||||||||||    
T  37965170 aatagtaaaagacaaaatggaaaacgacacaagatttaacgtggtatccaacaa 37965223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 14721951 - 14721901
Alignment:
Q  19 atagtaaaagatagaataaaaaacgacacaagatttaacgaagtatccaacaa 71  Q
    |||||||||||| |||| ||||||||||||||||||||||  |||||||||||    
T  14721951 atagtaaaagattgaatgaaaaacgacacaagatttaacg--gtatccaacaa 14721901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 16909988 - 16910037
Alignment:
Q  18 aatagtaaaagatagaataaaaaacgacacaagatttaacgaagtatcca 67  Q
    |||||||||||| | ||| ||||||||||||||||||||||  |||||||    
T  16909988 aatagtaaaagacataatgaaaaacgacacaagatttaacgtggtatcca 16910037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 194 - 304
Target Start/End: Original strand, 22880032 - 22880144
Alignment:
Q  194 gaaatactaatacacaagatccttatttatatgatcaagtctt-acatatttcttcttattctttgatgtgagacttttt-ctaacactaattcaagaca 291  Q
    |||||| ||| |||||| | | |||||||||||| ||||| || | |||||||||  |||||| || |||| |||||||| | ||||||||||||||  |    
T  22880032 gaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgtgtgacttttttccaacactaattcaaggta 22880131  T
Q  292 tatttcaacaaat 304  Q
     ||||||||||||    
T  22880132 aatttcaacaaat 22880144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 303
Target Start/End: Complemental strand, 31141425 - 31141359
Alignment:
Q  238 catatttcttcttattctttgatgtgagact-ttttctaacactaattcaagacatatttcaacaaa 303  Q
    ||||||||||| |||||| |||||||||||| |||||||||| || || |||  |||||||||||||    
T  31141425 catatttcttcctattctctgatgtgagacttttttctaacaatattttaagttatatttcaacaaa 31141359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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