View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15456_low_13 (Length: 520)
Name: NF15456_low_13
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 5 - 506
Target Start/End: Complemental strand, 24183439 - 24182938
Alignment:
| Q |
5 |
accaacaccaacgagtgagttatcttcgttctctagaaatgcatcaagagattgtggaacaaatgaagcatacaatatttgacaaccaagtcattttttc |
104 |
Q |
| |
|
|||||||||||| | || ||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||| |||||| || |||| ||||||||| |
|
|
| T |
24183439 |
accaacaccaacaaatgtgttatcttcgttctcaagaaatgcaacaagagattgtggaacaaatgaagcatgcaaaatttgaaaaacaaggcattttttc |
24183340 |
T |
|
| Q |
105 |
tttatgcagagttggagaacagcgacggggttttcgacattgcgctgtctggttgggagccactccacatcaaggccgacaaggaagcggcggctgcggc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24183339 |
tttatgcagagttggagaacagcgacggggttttcgacattgcgttgtctgtttgggagccactccacatcaaggccgacaaggaagcggcggctgcggc |
24183240 |
T |
|
| Q |
205 |
tagtttgggagagggttgaaagccagcaatcaaccatggaaggatcatgtgtgaccattgtgtgaatggtttcggagtggaagacaacattgtagttttc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24183239 |
tagtttgggagagggttgaaagccagcaatcaaccatggaaggatcatgtgtgaccattgtgtgaatggtttcggagtggaagacaacattgtagttttc |
24183140 |
T |
|
| Q |
305 |
gtgagtggacattttggctttgaagagaaggttatttctgaaaaacgatttaataatgacactctttgtttttgtttaaagagtgtaataatacattgaa |
404 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24183139 |
gtaagtggacattttggctttgaagagaaggttatttctgaaaaacgatttaataatgacactctttgtttctgtttaaagagtgtaataatacattgaa |
24183040 |
T |
|
| Q |
405 |
acggaagaacaattcctttatatagagtaagaatgaaaatagtagggagtaggagtatctaattaggtgtacacagtaattttattcacgcttcaatctt |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
24183039 |
acggaagaacaattcctttatatagagtaagaatgaaaatagtagggagtaggagtatcaaattaggtgtacactgtaattttattcacgcttcaatttt |
24182940 |
T |
|
| Q |
505 |
tt |
506 |
Q |
| |
|
|| |
|
|
| T |
24182939 |
tt |
24182938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University