View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_low_14 (Length: 494)
Name: NF15456_low_14
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 3501626 - 3501188
Alignment:
| Q |
1 |
cctgcatttgttcatgatcaaaatgtacatgctttagatgtccaatcctaagcacaagagggtgtgttgagttccaaagttgattagagatatattgctt |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3501626 |
cctgcgtttgttcatgatcaaaatgtacatgctttagatgtccaatcctaagcacaagagggtgtgttgagttccaaagttgattagagatatatagctt |
3501527 |
T |
|
| Q |
101 |
cggtagttttttaagattcaagcaattcttgtcttacaagccaatttttaggttgagttaggcgtaaaatataatagtttgtataatggatagttgatga |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3501526 |
cggtatttttttaagattcaagcaattcttgtcttacaagccaatttttaggttgagttaggcgtaaaatataatagtttgtataatggatagttgatga |
3501427 |
T |
|
| Q |
201 |
aagatttaatagaaaataattgactagattgggatattttggaggttacattgcattaaagaatttatggacgagttcaagaagattcaattgattaatt |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3501426 |
aagatttaagagaaaataattgactagattgggatattttggaggttacattgcattaaagaatttatggacgagttcaagaagattcaattgattaatt |
3501327 |
T |
|
| Q |
301 |
tctaaaactttctctattacatgcgtgaacaatgattgtgttccttttaatcgaaaattttaatcttgatcgtttactttgatctacggttaatattata |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
3501326 |
tctaaaactttctctattacatgcgtgaacaatgattgtgttccttttaatcgaaaattttaatcttgatcgtttattttgatctatggttaatattata |
3501227 |
T |
|
| Q |
401 |
tcttcccatttcttagattgattcacacctctcacttga |
439 |
Q |
| |
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| T |
3501226 |
tcctcccatttcttagattgattcacacctctcacttga |
3501188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 102 - 439
Target Start/End: Complemental strand, 3513846 - 3513516
Alignment:
| Q |
102 |
ggtagttt-tttaagattcaagcaattcttgtcttacaagccaat--ttttaggttgagttaggcgtaaaatataatagtttgtataatggatagttgat |
198 |
Q |
| |
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|||||||| |||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||| ||||| |||||||||||||||| || |||| |
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| T |
3513846 |
ggtagtttctttaagattcaagcaattcttgccttacaagcaaatctttttaggttgagttaggcgcaaaatctaatagtttgtataatcgagagtt--- |
3513750 |
T |
|
| Q |
199 |
gaaagatttaatagaaaataattgactagattgggatattttggaggttacattgcattaaagaatttatggacgagttcaagaagattcaattgattaa |
298 |
Q |
| |
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|||| || || |||||||||||||||||| ||| | || | ||||||||| ||||||||||||| || ||||| |||||| ||||||||| |
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| T |
3513749 |
--aagagc------aagatgattgactagattgggataattttggggctccattgcatttaagaatttatggatgaattcaataagatttgattgattaa |
3513658 |
T |
|
| Q |
299 |
tttctaaaactttctctattacatgcgtgaacaatgattgtgttcctttt-aatcgaaaattttaatcttgatcgtttactttgatctacggttaatatt |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3513657 |
tttctaaaactttctctattacatgcgtgaacaatgattgtgttccttttaaattgaaaattttaatcttgatcgtttattttgatctacggttaatatt |
3513558 |
T |
|
| Q |
398 |
atatcttcccatttcttagattgattcacacctctcacttga |
439 |
Q |
| |
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| T |
3513557 |
atatcctcccatttcttacattgactcacacctctcacttga |
3513516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 183 - 439
Target Start/End: Complemental strand, 2357188 - 2356930
Alignment:
| Q |
183 |
ataatggatagttgatgaaagatttaatag-aaaataattgactagattgggat-attttggaggttacattgcattaaagaatttatggacgagttcaa |
280 |
Q |
| |
|
||||| |||||| |||| ||||||||| || ||||||||||||||||||| ||| ||||||| ||| |||| |||| |||||||| |||| || ||||| |
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| T |
2357188 |
ataatcgatagtggatgcaagatttaagagcaaaataattgactagattgagatgattttgggggtc-cattacatttaagaatttgtggatgaattcaa |
2357090 |
T |
|
| Q |
281 |
gaagattcaattgattaatttctaaaactttctctattacatgcgtgaacaatgattgtgttcc-ttttaatcgaaaattttaatcttgatcgtttactt |
379 |
Q |
| |
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||||||| |||||||||||||| |||||||||| |||||||| |||||||||||| ||| || ||||| | |||| | |||| ||||| ||||| || |
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| T |
2357089 |
gaagatttgattgattaatttcttaaactttctcaattacatgtgtgaacaatgatcatgtgcctttttagtttaaaactgtaatgttgattgtttattt |
2356990 |
T |
|
| Q |
380 |
tgatctacggttaatattatatcttcccatttcttagattgattcacacctctcacttga |
439 |
Q |
| |
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||||||||||||||||||||||| |||||| | ||| |||| |||| |||||||||||| |
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| T |
2356989 |
tgatctacggttaatattatatcctcccatgtattacattgtctcacgcctctcacttga |
2356930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 183 - 437
Target Start/End: Original strand, 2352244 - 2352498
Alignment:
| Q |
183 |
ataatggatagttgatgaaagatttaatag-aaaataattgactagattgggatattttggaggttacattgcattaaagaatttatggacgagttcaag |
281 |
Q |
| |
|
||||| |||||| |||| ||||||||| || ||||||||| ||||||||| |||| ||| | |||| |||| |||| |||||||| |||| || |||||| |
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| T |
2352244 |
ataatcgatagtggatgcaagatttaagagcaaaataattaactagattgagataattttggggtt-cattacatttaagaatttgtggatgaattcaag |
2352342 |
T |
|
| Q |
282 |
aagattcaattgattaatttctaaaactttctctattacatgcgtgaacaatgattgtgttcc-ttttaatcgaaaattttaatcttgatcgtttacttt |
380 |
Q |
| |
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|||||| |||||||||||||| |||||||| | |||||||| |||||||||||| ||| || ||||| | ||||| | |||| ||||||||||| ||| |
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| T |
2352343 |
aagatttgattgattaatttctcaaactttcacaattacatgtgtgaacaatgatcatgtgcctttttagttgaaaactgtaatgttgatcgttta-ttt |
2352441 |
T |
|
| Q |
381 |
gatctacggttaatattatatcttcccatttcttagattgattcacacctctcactt |
437 |
Q |
| |
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|||||| ||||||||||||||| |||||||| ||| ||| |||| |||||||||| |
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|
| T |
2352442 |
gatctaaggttaatattatatcctcccatttattacattatctcacgcctctcactt |
2352498 |
T |
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