View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_low_17 (Length: 451)
Name: NF15456_low_17
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 39 - 358
Target Start/End: Original strand, 683524 - 683843
Alignment:
| Q |
39 |
accggaatccgaaaaatgcgaaagttcaaagtgttgttaccgaatggaactagtgtggaattgaaagttctgaagacagaaaatgcaatgcattttggtg |
138 |
Q |
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| T |
683524 |
accggaatccgaaaaatgcgaaagttcaaagtgttgttaccgaatggaactagtgtggaattgaaagttctgaacacagaaaatgcaatgcattttggtg |
683623 |
T |
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| Q |
139 |
aattcgttggattaattcgaactaggtatctcgaagttcagagaaagaatgaatccatgaggaagaaaagggaaatcaattggaatagtggtggtttgtt |
238 |
Q |
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| T |
683624 |
aattcgttggattaattcgaactaggtatctacaagttcagaggaagaatgaatccatgaggaagaaaagggaaatcaattggaatagtggtggtttgtt |
683723 |
T |
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| Q |
239 |
tcttgaagatgttagtgataataagatcaagaacgttgttgatttcaaaaatttcattcctaacaagtgccacattttacgccttaatgttagtatatac |
338 |
Q |
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| T |
683724 |
tcttgaagatgttagtgataataagatcaagaacgttgttgatttcaaaaatttcattcctaacaagtgccacattttacgccttaatgttagtatatac |
683823 |
T |
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| Q |
339 |
taataagatattgattctga |
358 |
Q |
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| T |
683824 |
taataagatattgattctga |
683843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 189 - 330
Target Start/End: Original strand, 645926 - 646067
Alignment:
| Q |
189 |
gaatccatgaggaagaaaagggaaatcaattggaatagtggtggtttgtttcttgaagatgttagtgataataagatcaagaacgttgttgatttcaaaa |
288 |
Q |
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| T |
645926 |
gaatccatgaagaagaaaagtgaaatcaattggaactgtgatgatttgtatcttgaagatgccaatgataataagatcaaggatgttgttgatttcggaa |
646025 |
T |
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| Q |
289 |
atttcattcctaacaagtgccacattttacgccttaatgtta |
330 |
Q |
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| T |
646026 |
acttcgttcctaagaagtgccatattttacgccttaaagtta |
646067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 645796 - 645842
Alignment:
| Q |
62 |
gttcaaagtgttgttaccgaatggaactagtgtggaattgaaagttc |
108 |
Q |
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| T |
645796 |
gttcaaagtgttgttaccaaatggaacaattgtggaactgaaagttc |
645842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 419 - 447
Target Start/End: Original strand, 683904 - 683932
Alignment:
| Q |
419 |
ctcaatcaggatgggaaaggcgatgttgc |
447 |
Q |
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| T |
683904 |
ctcaatcaggatgggaaaggcgatgttgc |
683932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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