View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_low_18 (Length: 442)
Name: NF15456_low_18
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 30291302 - 30291564
Alignment:
| Q |
1 |
cattcattcaaattgatagagtatgcatcatatacaattacgtgttaaaataaaatatttgtactcaaaaaagaatatatgagatgtttacttcaaagaa |
100 |
Q |
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| T |
30291302 |
cattcattcaaattgacagagtatgcatcatatacaattacgtgttaaaataaaatatttgtactcaaaaaagaatatatgagatgtttactttaaagaa |
30291401 |
T |
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| Q |
101 |
aagaatgattgaacacccgaacttcggattatcagaagacattttccctcaaaatcgaatgattaaaagaaaaactttacaattttagttcttctaaaca |
200 |
Q |
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|||||||||||||||| | |||||| |||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30291402 |
aagaatgattgaacactcaaacttctgattatcataagacattttccctcgaaatcaaatgattaaaagaaaaactttacaattttagttcttctaaaca |
30291501 |
T |
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| Q |
201 |
acatgatatttttggctaaaaatggatcatagagtcgtctgctacatcaccttgatcatatat |
263 |
Q |
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| T |
30291502 |
acatgatatttttggctaaaaatgggtcatagagtcgtctgctgcatcaccttgatcatatat |
30291564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 366 - 439
Target Start/End: Original strand, 30291665 - 30291738
Alignment:
| Q |
366 |
ctaaagcacgagagacaacatcacactataaagcgagcgaggcaaatatttgaatgcacctagttttaattctt |
439 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30291665 |
ctaaagcacgagagacaacatcacacaataaagcgagcgaggcaaatatttaaatgcacctagttttaattctt |
30291738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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