View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15456_low_2 (Length: 770)

Name: NF15456_low_2
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15456_low_2
NF15456_low_2
[»] chr5 (16 HSPs)
chr5 (356-759)||(42840633-42841035)
chr5 (19-418)||(42840244-42840643)
chr5 (237-402)||(24655467-24655632)
chr5 (243-402)||(29416755-29416914)
chr5 (484-568)||(21699390-21699474)
chr5 (465-568)||(42729895-42729998)
chr5 (161-356)||(39724444-39724639)
chr5 (270-418)||(41996205-41996353)
chr5 (459-508)||(41996385-41996434)
chr5 (243-356)||(16486712-16486825)
chr5 (459-570)||(42411627-42411738)
chr5 (459-517)||(37408516-37408574)
chr5 (459-570)||(42414567-42414678)
chr5 (243-361)||(28019144-28019262)
chr5 (266-356)||(42413994-42414084)
chr5 (539-568)||(41996504-41996533)
[»] scaffold0068 (1 HSPs)
scaffold0068 (484-568)||(14436-14520)
[»] chr8 (1 HSPs)
chr8 (235-366)||(15631811-15631940)
[»] chr3 (1 HSPs)
chr3 (234-354)||(2703723-2703843)
[»] chr6 (1 HSPs)
chr6 (705-747)||(286803-286845)
[»] chr2 (1 HSPs)
chr2 (234-340)||(27716942-27717048)


Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 356 - 759
Target Start/End: Original strand, 42840633 - 42841035
Alignment:
Q  356 agttgtctctttatagtttgctataaaagcaatggatccatttaataccaccaattttctcttcttgttataattaaaatcaaaatcaaaagtatctcct 455  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42840633 agttgtctctttatagtttgctataaaagcaatggatccatttaataccaccaattgtctcttcttgttataattaaaatcaaaatcaaaagtatctcct 42840732  T
Q  456 tcataagaaggtatgggtgttgtaataaaagattcattgctgaagtcaaatgaaaccaaatatgtatgtgttacttctatatcccaccaatgagacactc 555  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  42840733 tcaaaagaaggtatgggtgttgtaataaaagattcattgctgaagtcaaatgaaaccaaatatgtatgtgttacttctatatcccaccaatgagacattc 42840832  T
Q  556 catccatgtacacttcttcgctgcatttgtctgaatgatgcataccgcaatcaattttcctccaagagttgttgtttaggctataaatctcccagaagga 655  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42840833 catccatgtacacttcttcaccgcatttgtctgaatgatgcataccgcaatcaattttcctccaagagttgttgtttaggctataaatctccgagaagga 42840932  T
Q  656 agaaaactgtagaccaaaacgacggttagtttgtgaagaacaatgtgtacaccgaatcatcttatagtcatctttcacacgatcataaccaacttgagaa 755  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  42840933 agaaaactgtagaccaaaacgacggttagtttgtgaagaacaatgtgtacaccgaatcatcttatagtcatctttcacacgatcataa-caacttgataa 42841031  T
Q  756 taat 759  Q
    ||||    
T  42841032 taat 42841035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 418
Target Start/End: Original strand, 42840244 - 42840643
Alignment:
Q  19 tttgtgtccaaggcaaaattaaataaccataatcatatagctcatgggtcaaaagtcaaaacaaagaagaaaatttactatatattcctgcaattggaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42840244 tttgtgtccaaggcaaaattaaataaccataatcatatagctcatgggtcaaaagtcaaaacaaagaagaaaatttactatatattcctgcaattggaag 42840343  T
Q  119 aaggctttccttctggaaaaatatcttgcaatgaaatttcgctataacaccaatttcttcaatcattccggtacttaaatcaaaccaagctagttcattg 218  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42840344 aaggctttccttctggaaaaatatcttacaatgaaatttcgctataacaccaatttcttcaatcattccggtacttaaatcaaaccaagctagttcattg 42840443  T
Q  219 tcnnnnnnnataatcaatatattgcccttcttccctgctccaattggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnn 318  Q
    ||       |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||         
T  42840444 tctttttttataatcaatatattgcccttcttccctgctccaattggatactcaaggcaaggtaagggaccaacaataaagactttagtccatgattctt 42840543  T
Q  319 nnacaccaagttcacccaaaattgaaatttgaaatgtagttgtctctttatagtttgctataaaagcaatggatccatttaataccaccaattttctctt 418  Q
      |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||    
T  42840544 ttacaccaagttcacccaaaattgaaatgtgaaatgtagttgtctctttatagtttgctataaaagcaacggatccatttaataccaccagttgtctctt 42840643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 237 - 402
Target Start/End: Complemental strand, 24655632 - 24655467
Alignment:
Q  237 atattgcccttcttccctgctccaattggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcaccca 336  Q
    |||| ||||||||| || ||||| || |||||||||||| |||| ||||| || |||||||||| ||||||||||||       ||||| ||||| ||||    
T  24655632 atatcgcccttctttccagctccgataggatactcaaggcaaggaaagggccctacaataaagatcttagtccatgattcctttacaccgagttctccca 24655533  T
Q  337 aaattgaaatttgaaatgtagttgtctctttatagtttgctataaaagcaatggatccatttaata 402  Q
    |||||||||| |||||||||  ||||||||||||  || |||| |||||||| || || |||||||    
T  24655532 aaattgaaatgtgaaatgtacctgtctctttataacttactatgaaagcaatagacccgtttaata 24655467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 243 - 402
Target Start/End: Original strand, 29416755 - 29416914
Alignment:
Q  243 cccttcttccctgctccaattggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcacccaaaattg 342  Q
    |||||||| |||||||| || ||| |||||||| |||| ||||| || |||||||||| ||||||||||||       ||||| ||||| ||||||||||    
T  29416755 cccttctttcctgctccgataggacactcaaggcaaggaaagggccctacaataaagatcttagtccatgattcctttacaccgagttctcccaaaattg 29416854  T
Q  343 aaatttgaaatgtagttgtctctttatagtttgctataaaagcaatggatccatttaata 402  Q
    |||| |||||||||  ||||||| ||||  ||  ||| |||||||| || ||||||||||    
T  29416855 aaatgtgaaatgtacctgtctctatataacttattatgaaagcaatagacccatttaata 29416914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 484 - 568
Target Start/End: Complemental strand, 21699474 - 21699390
Alignment:
Q  484 aagattcattgctgaagtcaaatgaaaccaaatatgtatgtgttacttctatatcccaccaatgagacactccatccatgtacac 568  Q
    ||||||||||||||||||||||||| |||||||||| ||||| | ||  | || ||||||||||| |||||||||||||||||||    
T  21699474 aagattcattgctgaagtcaaatgacaccaaatatgcatgtgcttctcttttagcccaccaatgacacactccatccatgtacac 21699390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 465 - 568
Target Start/End: Complemental strand, 42729998 - 42729895
Alignment:
Q  465 ggtatgggtgttgtaataaaagattcattgctgaagtcaaatgaaaccaaatatgtatgtgttacttctatatcccaccaatgagacactccatccatgt 564  Q
    |||||| ||||||||||  ||||||||||| ||||||||||||| |||||||||| ||||| | ||  | || ||||||||| | |||||||||||||||    
T  42729998 ggtatgagtgttgtaatgcaagattcattgttgaagtcaaatgacaccaaatatgcatgtgcttctattttagcccaccaattacacactccatccatgt 42729899  T
Q  565 acac 568  Q
    ||||    
T  42729898 acac 42729895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 161 - 356
Target Start/End: Original strand, 39724444 - 39724639
Alignment:
Q  161 tataacaccaatttcttcaatcattccggtacttaaatcaaaccaagctagttcattgtcnnnnnnnataatcaatatattgcccttcttccctgctcca 260  Q
    |||||||||||| || ||||||||  || |||||| ||||||||| |||||||||  |||        ||| |||||| ||||||||||| || |||||     
T  39724444 tataacaccaatctcctcaatcatctcgttacttacatcaaaccaggctagttcaccgtctcttttcctaaacaatatcttgcccttcttacccgctccg 39724543  T
Q  261 attggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcacccaaaattgaaatttgaaatgta 356  Q
    |||||||| |||||| ||||||| || |||||||| ||||  |||||||||||       | ||| ||||| ||||||||||| || |||||||||    
T  39724544 attggataatcaaggcaaggtaaaggtccaacaatgaagagtttagtccatgattcttttataccgagttcccccaaaattgatatgtgaaatgta 39724639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 270 - 418
Target Start/End: Original strand, 41996205 - 41996353
Alignment:
Q  270 tcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcacccaaaattgaaatttgaaatgtagttgtctctttat 369  Q
    ||||||||| |||| || |||||||| |||| ||||||||||||       ||| ||||||||||||||||| |||| |||||||||| |||||   |||    
T  41996205 tcaaggtaatgtaaaggcccaacaatgaagagcttagtccatgattcctttacatcaagttcacccaaaattaaaatgtgaaatgtagatgtcttggtat 41996304  T
Q  370 agtttgctataaaagcaatggatccatttaataccaccaattttctctt 418  Q
      |||   ||||||||||| |||||||||||||||| ||| | ||||||    
T  41996305 gatttaacataaaagcaatagatccatttaataccatcaaatgtctctt 41996353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 459 - 508
Target Start/End: Original strand, 41996385 - 41996434
Alignment:
Q  459 taagaaggtatgggtgttgtaataaaagattcattgctgaagtcaaatga 508  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  41996385 taagagggtatgggtgttgtaatgaaagattcattgctgaagtcaaatga 41996434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 243 - 356
Target Start/End: Original strand, 16486712 - 16486825
Alignment:
Q  243 cccttcttccctgctccaattggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcacccaaaattg 342  Q
    |||||||| || |||||||| ||||||||||| ||||||||||| || | ||| |||| |||| |||||||       ||||||| |||||| |||||||    
T  16486712 cccttctttccggctccaataggatactcaagataaggtaagggccctaaaatgaagatcttaatccatgatttctttacaccaaattcacctaaaattg 16486811  T
Q  343 aaatttgaaatgta 356  Q
    |||| |||||||||    
T  16486812 aaatgtgaaatgta 16486825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 459 - 570
Target Start/End: Complemental strand, 42411738 - 42411627
Alignment:
Q  459 taagaaggtatgggtgttgtaataaaagattcattgctgaagtcaaatgaaaccaaatatgtatgtgttacttctatatccca-ccaatgagacactcca 557  Q
    ||||| |||||||||  | ||||  |||||||| ||||||||||||| || |||||||||||| ||||| || || |  |||| ||||||||||||||||    
T  42411738 taagagggtatgggtaatttaatgcaagattcactgctgaagtcaaacgacaccaaatatgtacgtgtt-ctactttcacccaaccaatgagacactcca 42411640  T
Q  558 tccatgtacactt 570  Q
    |||||||||||||    
T  42411639 tccatgtacactt 42411627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 459 - 517
Target Start/End: Original strand, 37408516 - 37408574
Alignment:
Q  459 taagaaggtatgggtgttgtaataaaagattcattgctgaagtcaaatgaaaccaaata 517  Q
    ||||| |||||||||||||||||||||||||| |||| ||||||||| || ||||||||    
T  37408516 taagagggtatgggtgttgtaataaaagattccttgcagaagtcaaacgacaccaaata 37408574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 459 - 570
Target Start/End: Complemental strand, 42414678 - 42414567
Alignment:
Q  459 taagaaggtatgggtgttgtaataaaagattcattgctgaagtcaaatgaaaccaaatatgtatgtgttacttctat-atcccaccaatgagacactcca 557  Q
    ||||| |||||||||||| ||||  |||||||| |||||||||||||||| ||||||  || |||| || || || | | |  |||||||||||||||||    
T  42414678 taagagggtatgggtgttataatgcaagattcactgctgaagtcaaatgacaccaaacttggatgt-tttctactttcacctaaccaatgagacactcca 42414580  T
Q  558 tccatgtacactt 570  Q
    |||||||||||||    
T  42414579 tccatgtacactt 42414567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 243 - 361
Target Start/End: Complemental strand, 28019262 - 28019144
Alignment:
Q  243 cccttcttccctgctccaattggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcacccaaaattg 342  Q
    |||||||| || ||||| ||||||| ||||||| ||||||| || || ||||  ||||  |||||||||||       |||| |||||||||||| ||||    
T  28019262 cccttctttcccgctccgattggatgctcaaggcaaggtaatggtcctacaacgaagattttagtccatgattcctttacactaagttcacccaagattg 28019163  T
Q  343 aaatttgaaatgtagttgt 361  Q
    |||| |||| |||||||||    
T  28019162 aaatgtgaattgtagttgt 28019144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 266 - 356
Target Start/End: Complemental strand, 42414084 - 42413994
Alignment:
Q  266 atactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcacccaaaattgaaatttgaaatgta 356  Q
    |||| ||| |||||||||||| |||||||||||||  |||||||||||       ||||||| ||| |||||||||||||| |||| ||||    
T  42414084 atacccaaagtaaggtaagggtccaacaataaagagtttagtccatgactcctttacaccaaattcgcccaaaattgaaatgtgaattgta 42413994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 539 - 568
Target Start/End: Original strand, 41996504 - 41996533
Alignment:
Q  539 ccaccaatgagacactccatccatgtacac 568  Q
    ||||||||||||||||||||||||||||||    
T  41996504 ccaccaatgagacactccatccatgtacac 41996533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 484 - 568
Target Start/End: Original strand, 14436 - 14520
Alignment:
Q  484 aagattcattgctgaagtcaaatgaaaccaaatatgtatgtgttacttctatatcccaccaatgagacactccatccatgtacac 568  Q
    ||||||||||||||||||||||||| |||||||||| ||||| | ||  | || ||||||||||| |||||||||||||||||||    
T  14436 aagattcattgctgaagtcaaatgacaccaaatatgcatgtgcttctcttttagcccaccaatgacacactccatccatgtacac 14520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 366
Target Start/End: Original strand, 15631811 - 15631940
Alignment:
Q  235 atatattgcccttcttccctgctccaattggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcacc 334  Q
    |||||||||| |||||||| |||  ||| |||||||||||| |||| || |   ||| ||||||||  |||||||||||       |||||  |||||||    
T  15631811 atatattgccattcttccccgct--aataggatactcaaggcaagggaatgattcaaaaataaagagtttagtccatgattctattacaccgggttcacc 15631908  T
Q  335 caaaattgaaatttgaaatgtagttgtctctt 366  Q
    |||||||||||| ||| |||||| ||||||||    
T  15631909 caaaattgaaatgtgatatgtagatgtctctt 15631940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 354
Target Start/End: Complemental strand, 2703843 - 2703723
Alignment:
Q  234 aatatattgcccttcttccctgctccaattggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcac 333  Q
    ||||||||||||||||||| ||||||||| |||   |||| | |||  |||||  |||||  |||||  ||| |||||||       |||||||||||||    
T  2703843 aatatattgcccttcttccatgctccaataggactatcaatgcaagacaagggttcaacatcaaagagtttaatccatgattccttgacaccaagttcac 2703744  T
Q  334 ccaaaattgaaatttgaaatg 354  Q
    |||||||||||||||| ||||    
T  2703743 ccaaaattgaaatttggaatg 2703723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 705 - 747
Target Start/End: Original strand, 286803 - 286845
Alignment:
Q  705 caccgaatcatcttatagtcatctttcacacgatcataaccaa 747  Q
    |||||||||| ||||||||||||||| ||| ||||||||||||    
T  286803 caccgaatcaccttatagtcatctttaacatgatcataaccaa 286845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 234 - 340
Target Start/End: Original strand, 27716942 - 27717048
Alignment:
Q  234 aatatattgcccttcttccctgctccaattggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcac 333  Q
    ||||||||||||||||||||| ||||||| |||| ||| | | |||  |||||||||| |  ||||| |||| |||||||       |||||| ||||||    
T  27716942 aatatattgcccttcttccctactccaataggatgctccatgcaagacaagggaccaatatcaaagagcttaatccatgattccttgacaccaggttcac 27717041  T
Q  334 ccaaaat 340  Q
    |||||||    
T  27717042 ccaaaat 27717048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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