View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_low_21 (Length: 437)
Name: NF15456_low_21
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 434
Target Start/End: Original strand, 36530321 - 36530736
Alignment:
| Q |
19 |
atgttagcttttatgcttgtctatttatttagggttcgattatttagaaattgttgagaaattaatttcattttagttaatgtctgctagtctagaagtt |
118 |
Q |
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| T |
36530321 |
atgttagcttttatgcttgtctatttatttagggttcgattatttagaaattgttgagaaattaatttcattttagttaatgtctgctagtctagaagtt |
36530420 |
T |
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| Q |
119 |
ctgagattgattggattttattcaatggattgtattagattttactctt-aaatttcagcggattgtaaatggattgttttgatccattcattaacaatc |
217 |
Q |
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| T |
36530421 |
ctgagattgattggattttattcaatggattgtattagattttactcttaaaatttcagcggattgtaaatggattgttttgatccattcattaacaatc |
36530520 |
T |
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| Q |
218 |
caatgcaaatctatcaaattaatccattttgccaccttagaactaatttatttgttgtgttgcggcattttcttgcgtgtgaatgaatcatgtctacagc |
317 |
Q |
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| T |
36530521 |
caatgcaaatctatcaaattcatccattttgccaccttagaactaatttatttgttgtgttgcggcattttcttgtgtgtgaatgaatcatgtctacagc |
36530620 |
T |
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| Q |
318 |
a-ccgtgttcgtgttatcttttatgctagtaatacatgatatagtagtgaatactgactatagatgattgacacgacatttgtacatatgattgcattca |
416 |
Q |
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| T |
36530621 |
acccgtgttcgtgttatcttttatgctagtaatacatgatatagtagtgaatattgac--tagaggattgacacgacatttgtacatgtgattgcattca |
36530718 |
T |
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| Q |
417 |
agtatttccattgtctta |
434 |
Q |
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| T |
36530719 |
agtatttccattgtctta |
36530736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 239 - 313
Target Start/End: Original strand, 36530230 - 36530304
Alignment:
| Q |
239 |
atccattttgccaccttagaactaatttatttgttgtgttgcggcattttcttgcgtgtgaatgaatcatgtcta |
313 |
Q |
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| T |
36530230 |
atccatttttccaccctagaactaatttgattgttatgttgcggcattttctcgtgtgtgaatgaatcatgtcta |
36530304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 21417782 - 21417834
Alignment:
| Q |
328 |
tgttatcttttatgctagtaatacatgatatagtagtgaatactgactataga |
380 |
Q |
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| T |
21417782 |
tgttatctattatgctagtaatacatgatatagtagtgaatactgaccataga |
21417834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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