View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_low_22 (Length: 433)
Name: NF15456_low_22
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 11604076 - 11603662
Alignment:
| Q |
1 |
tgcaacaatagttaaagaacaagatatggtatggcctgagcgagttcgacgtttatcggtcataaatccttcgcataatgtattacaacaaaatacgact |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11604076 |
tgcaacaatagttaaagaacaagatatggtatggcctgagcgagttcgacgtttatcggtcataaatccttcgcataatgtattacaacaaaatacgact |
11603977 |
T |
|
| Q |
101 |
acatttcatcttaggtctctgctaatgtttggattatcagatttactcaatcagttttctcttcatgaattatgctcctccaatggtgttcaatttctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11603976 |
acatttcatcttaggtctctgctaatgtttggattatcagatttactcaatcagttttctcttcatgaattatgctcctccaatggtgttcaatttctca |
11603877 |
T |
|
| Q |
201 |
atgtactagacttgcaggatgcacctttggatgattttcctgctgaaattgtcaacctttaccttctgaagtatctaagtttgaagaatacaaaggtgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11603876 |
atgtactagacttgcaggatgcacctttggatgattttcctgctgaaattgtcaacctttaccttctgaagtatctaagtttgaagaatacaaaggtgaa |
11603777 |
T |
|
| Q |
301 |
aaatattccaggttccattaagaggctgcaaaaccttgagacattggatcttaagcacacgtctgtaactgaactgcctgttgaaattgcggagctgaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11603776 |
aaatattccaggttccattaagaggctgcaaaaccttgagacattggatcttaagcacacgtctgtaactgaactgcctgttgaaattgcggagctgaaa |
11603677 |
T |
|
| Q |
401 |
cggttacgccatctc |
415 |
Q |
| |
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||||||||||||||| |
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| T |
11603676 |
cggttacgccatctc |
11603662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 11623373 - 11623787
Alignment:
| Q |
1 |
tgcaacaatagttaaagaacaagatatggtatggcctgagcgagttcgacgtttatcggtcataaatccttcgcataatgtattacaacaaaatacgact |
100 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||| || |||||||| |||||||| ||||||||| | || ||||||||| |||| || | ||| |
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| T |
11623373 |
tgcaacagtagccaaagaacaagatatggtatggccggaacgagttcgtcgtttatcagtcataaattcgtcacataatgtacataaacagaacaagacc |
11623472 |
T |
|
| Q |
101 |
acatttcatcttaggtctctgctaatgtttggattatcagatttactcaatcagttttctcttcatgaattatgctcctccaatggtgttcaatttctca |
200 |
Q |
| |
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| ||| | |||||||||||||||||||||| | ||||||||| | ||||||| |||||| | ||||||||||||||||||| ||||||| | || |||| |
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| T |
11623473 |
atattcaaacttaggtctctgctaatgtttgcaatatcagattcagtcaatcatttttctatccatgaattatgctcctccactggtgttaagttgctca |
11623572 |
T |
|
| Q |
201 |
atgtactagacttgcaggatgcacctttggatgattttcctgctgaaattgtcaacctttaccttctgaagtatctaagtttgaagaatacaaaggtgaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
11623573 |
atgtactagacttgcaggatgcacctttggaggattttcctgttgaaattgtaaacctttaccttctgaagcatctaagtttgaaaaatacaaaggtgaa |
11623672 |
T |
|
| Q |
301 |
aaatattccaggttccattaagaggctgcaaaaccttgagacattggatcttaagcacacgtctgtaactgaactgcctgttgaaattgcggagctgaaa |
400 |
Q |
| |
|
|| ||||||||||| ||||||| |||| || || | || |||||||||||||||||||| | ||| || ||| ||||||||||| |||||||||||||| |
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|
| T |
11623673 |
aagcattccaggttcaattaagaagctgaaatacttggaaacattggatcttaagcacacttatgtcacggaattgcctgttgaagttgcggagctgaaa |
11623772 |
T |
|
| Q |
401 |
cggttacgccatctc |
415 |
Q |
| |
|
||||||||||||||| |
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|
| T |
11623773 |
cggttacgccatctc |
11623787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 11641879 - 11642289
Alignment:
| Q |
1 |
tgcaacaatagttaaagaacaagatatggtatggcctgagcgagttcgacgtttatcggtcataaatccttcgcataatgtattacaacaaaatacgact |
100 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||| || |||||||| |||||||||||||||||| | || ||||||||| | |||| |||| ||| |
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|
| T |
11641879 |
tgcaacagtagccaaagaacaagatatggtatggccggaacgagttcgtcgtttatcggtcataaattcatcacataatgtacttaaacagaataagacc |
11641978 |
T |
|
| Q |
101 |
acatttcatcttaggtctctgctaatgtttggattatcagatttactcaatcagttttctcttcatgaattatgctcctccaatggtgttcaatttctca |
200 |
Q |
| |
|
| ||| | |||||||||||||||||||||| | ||||||||| | ||||||| |||||| | ||||||||||||||||||| ||||||| | || |||| |
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| T |
11641979 |
atattcaaacttaggtctctgctaatgtttgcaatatcagattcagtcaatcatttttctatccatgaattatgctcctccactggtgttaagttgctca |
11642078 |
T |
|
| Q |
201 |
atgtactagacttgcaggatgcacctttggatgattttcctgctgaaattgtcaacctttaccttctgaagtatctaagtttgaagaatacaaaggtgaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11642079 |
atgtactagacttgcaggatgcacctttggaggattttcctcttgaaattatcaacctttaccttctgaaacatctaagtttgaagaatacaaaggtgaa |
11642178 |
T |
|
| Q |
301 |
aaatattccaggttccattaagaggctgcaaaaccttgagacattggatcttaagcacacgtctgtaactgaactgcctgttgaaattgcggagctgaaa |
400 |
Q |
| |
|
||| |||||| |||| ||||||| ||| ||| || | || |||||||||||||| ||||| | ||| | ||| | ||| |||||||||||||||||||| |
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| T |
11642179 |
aaacattccaagttcaattaagaagctccaatacttggaaacattggatcttaaacacacttgtgtcatggaattaccttttgaaattgcggagctgaaa |
11642278 |
T |
|
| Q |
401 |
cggttacgcca |
411 |
Q |
| |
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||||||||||| |
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|
| T |
11642279 |
cggttacgcca |
11642289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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