View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_low_24 (Length: 422)
Name: NF15456_low_24
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 25 - 416
Target Start/End: Original strand, 42838195 - 42838590
Alignment:
| Q |
25 |
gtcatatctttagaggatttat----ggttgaataaaaaatgctaactcaacaaactcaagtcgaattttgtgcaatttactgaaatatgcttcatttaa |
120 |
Q |
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| T |
42838195 |
gtcatatctttagaggatttatttatggttgaataaaaaatgctaactcaacaaactcaaggccaattttgtgcaatttactgaaatacgcttcatttaa |
42838294 |
T |
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| Q |
121 |
tttctagagatggtttatgttatgtttgaatgaacttacannnnnnnnattaatttgttctccaagtttatcagagtctgaggaaatttgtctgttagaa |
220 |
Q |
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| T |
42838295 |
tttctagagatggtttatgttatgtttgaatgaacttacattttttttattaatttgttctccaagtttatcagagtctgaggaaatttgtctgttagaa |
42838394 |
T |
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| Q |
221 |
agttgtatatgctgcaaacggctcttcaagatttccagacatcagaaaaacaaatggaaatgccttattgaaattaagcactacacctatgacgataatc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42838395 |
agttgtatatgctgcaaacggctcttcaagatttccagacatcagaaaaacaaatggaaatgccttattgaaattaagcactacacctatgacgataatc |
42838494 |
T |
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| Q |
321 |
agagtacattatgtccatgtgagatcttgatctctatagctaatttcggagagattcttctttcatgcgtcatatagtttctcttgtctgtgctcc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42838495 |
agagtacattatgtccatgtgagatcttgatctctatagctaatttcggagagattcttctttcatgcgtcatatagtttctcttgtttgtgctcc |
42838590 |
T |
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