View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_low_27 (Length: 390)
Name: NF15456_low_27
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 386
Target Start/End: Complemental strand, 17125461 - 17125091
Alignment:
| Q |
17 |
accatttggtgtaagattttccaggtgcaccaatttcccattccactggtccatactcattctcaatctgtatcaattcaaatcagtggttaataaactt |
116 |
Q |
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| T |
17125461 |
accatttggtgtaagattttccaggtgcaccaatttcccattccactggtccatactcattctcaatctgtatcaattcaaatcagtggttaataaactt |
17125362 |
T |
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| Q |
117 |
caattcaagacgatccattcaggagaatccgagttcaaatcctgaccggatcaatc-ttggccagactataactatctcacagtcaaactccggattaca |
215 |
Q |
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| T |
17125361 |
caattcaagccgatccgttcaggagaatccgagttcaaatcctgaccggatcaatctttggccagactataactatctcacagtcaaactccggattaca |
17125262 |
T |
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| Q |
216 |
aatgtttaattcaacagtaaatttatcatcacagtttattacaaataatgggctgcataaattttatggtaaaataatatcatttgnnnnnnntgctaca |
315 |
Q |
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| T |
17125261 |
aatgtttaattcaacagtaaatttatcatcacagtttattacaaataatgggctgcataaactttatggtaaaataatatcatttgaaaaaaatgctaca |
17125162 |
T |
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| Q |
316 |
aataacaacttattgaaataccannnnnnnatttaattacctgagacaaaataattggaccacctttgctt |
386 |
Q |
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| T |
17125161 |
aataacaaattattgaaataccatttttttatttaattacctgagacaaaataattggaccaccttggctt |
17125091 |
T |
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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 5230394 - 5230327
Alignment:
| Q |
18 |
ccatttggtgtaagattttccaggtgcaccaatttcccattccactggtccatactcattctcaatct |
85 |
Q |
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| T |
5230394 |
ccattttgtgtaagcctttccaggagcaccaatttcccattccacaggtccatactcattctcaatct |
5230327 |
T |
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