View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15456_low_29 (Length: 367)
Name: NF15456_low_29
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 14237126 - 14236771
Alignment:
| Q |
1 |
tttgccttggtagggttctgcttaagaagagcaagattttggtgcttgatgaagcaactgcttcggttgatacagctacagataatttgattcagcaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14237126 |
tttgccttggtagggttctgcttaagaagagcaagattttggtgcttgatgaagcaactgcttcggttgatacagctacagataatttgattcagcaaac |
14237027 |
T |
|
| Q |
101 |
tcttaggaagcatttcactgactccacggtcattaccattgcgcatcgaataacttctgttcttgacagtgatatggttctacttcttagtcaaggttag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14237026 |
tcttaggaagcatttcactgactccacggtcattaccattgcgcatcgaataacttctgttcttgacagtgatatggttctacttcttagtcaaggttag |
14236927 |
T |
|
| Q |
201 |
taaaaaacttttattcgtcattgaactttcacttgtttcgttttctgaattttttgtctattgctgtagggcttattgaggagtatgactccccaaacac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
14236926 |
taaaaaacttttattcgtcattgaactttcacttgtttcgttttctgaattttttgtctattgctgtaggacttattgaggagtatgactccccaaacac |
14236827 |
T |
|
| Q |
301 |
attgctagaggataagtcatcatcttttgctaagcttgttgcagagtataccatga |
356 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14236826 |
attgctagaggataactcatcatcttttgctaagcttgttgcagagtataccatga |
14236771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 14378100 - 14378466
Alignment:
| Q |
1 |
tttgccttggtagggttctgcttaagaagagcaagattttggtgcttgatgaagcaactgcttcggttgatacagctacagataatttgattcagcaaac |
100 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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|
| T |
14378100 |
tttgccttggtagggttctacttaagaagagcaagattttggtccttgatgaagcaactgcatcagttgatacagctacagataatttgattcagcaaac |
14378199 |
T |
|
| Q |
101 |
tcttaggaagcatttcactgactccacggtcattaccattgcgcatcgaataacttctgttcttgacagtgatatggttctacttcttagtcaaggttag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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|
| T |
14378200 |
tcttaggaagcatttcactgactccacggtcattaccattgcgcatcgaataacttctgttcttgacagtgacatggttctacttcttagtcaaggtcag |
14378299 |
T |
|
| Q |
201 |
taa-aaaacttttattcgtcattgaactttca-------------cttgtttcgttttctgaa-ttttttgtctattgctgtagggcttattgaggagta |
285 |
Q |
| |
|
||| |||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||| |||||||||| |
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|
| T |
14378300 |
taacaaaacttttatttgtcattgaactttcagtatctttagttccttgtttcgttttctgaatttttttgtctattgctgtaggacttgttgaggagta |
14378399 |
T |
|
| Q |
286 |
tgactccccaaacacattgctagaggataagtcatcatcttttgctaagcttgttgcagagtatacc |
352 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14378400 |
tgactccccaaccacattgctagaggataagtcatcatcttttgctaagcttgttgcagagtatacc |
14378466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 356
Target Start/End: Complemental strand, 41448285 - 41447923
Alignment:
| Q |
9 |
ggtagggttctgcttaagaagagcaagattttggtgcttgatgaagcaactgcttcggttgatacagctacagataatttgattcagcaaactcttagga |
108 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41448285 |
ggtagggttcttcttaagaagagcaagattttggtgcttgacgaagcaactgcatcagttgatacagctacagataatttgattcagcaaactcttaggc |
41448186 |
T |
|
| Q |
109 |
agcatttcactgactccacggtcattaccattgcgcatcgaataacttctgttcttgacagtgatatggttctacttcttagtcaaggttagta--aaaa |
206 |
Q |
| |
|
|||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||| |
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|
| T |
41448185 |
agcatttcacggactctactgtcattaccattgcacatcgaataacttctgttcttgacagtgatatggttctacttcttgatcaaggttaggaataaaa |
41448086 |
T |
|
| Q |
207 |
acttttattcgtcattgaactttca------------ct---tgtttcgttttctgaattttttgtctattgctgtagggcttattgaggagtatgactc |
291 |
Q |
| |
|
||| |||||| || ||||||||| | || ||||| ||||||||| | ||||| ||||| |||||| |||||||||||||||||||| |
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|
| T |
41448085 |
actgttattcttcgttgaactttgatatatttttttccttggtgttttgttttctga--tgtttgtgtattggtgtaggacttattgaggagtatgactc |
41447988 |
T |
|
| Q |
292 |
cccaaacacattgctagaggataagtcatcatcttttgctaagcttgttgcagagtataccatga |
356 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41447987 |
cccaacgacattgttagaggataagtcatcatcttttgccaagcttgttgcagagtataccatga |
41447923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 9 - 336
Target Start/End: Complemental strand, 41434995 - 41434653
Alignment:
| Q |
9 |
ggtagggttctgcttaagaagagcaagattttggtgcttgatgaagcaactgcttcggttgatacagctacagataatttgattcagcaaactcttagga |
108 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41434995 |
ggtagggttcttcttaagaagagcaagattttggtgcttgatgaagccactgcatcagttgatacagctacagataatttgattcagcaaactcttaggc |
41434896 |
T |
|
| Q |
109 |
agcatttcactgactccacggtcattaccattgcgcatcgaataacttctgttcttgacagtgatatggttctacttcttagtcaaggttagtaa--aaa |
206 |
Q |
| |
|
|||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||| |
|
|
| T |
41434895 |
agcatttcaccgactctactgtcattaccattgcacatcgaataacttctgttcttgacagtcatatggttctacttcttaatcaaggttaggaatgaaa |
41434796 |
T |
|
| Q |
207 |
acttttattcgtcattgaactt---tcact------------tgtttcgttttctgaattttttgtctattgctgtagggcttattgaggagtatgactc |
291 |
Q |
| |
|
||| |||||| || |||||||| | || ||||| ||||||||| | ||||| ||||| |||||| |||||||||||||| ||||| |
|
|
| T |
41434795 |
actattattcttcgttgaacttcgatatcttttgttccttggtgtttagttttctga--tgtttgtgtattggtgtaggacttattgaggagtacgactc |
41434698 |
T |
|
| Q |
292 |
cccaaacacattgctagaggataagtcatcatcttttgctaagct |
336 |
Q |
| |
|
||||| |||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
41434697 |
cccaacgacattgttagaggataagtcatcgtcttttgctaagct |
41434653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 41442082 - 41441901
Alignment:
| Q |
1 |
tttgccttggtagggttctgcttaagaagagcaagattttggtgcttgatgaagcaactgcttcggttgatacagctacagataatttgattcagcaaac |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41442082 |
tttgcctaggtagggttctgcttaagaagagcaagattttggtgcttgacgaagcaactgcttcagttgatacagctacagataatttgattcagcaaac |
41441983 |
T |
|
| Q |
101 |
tcttaggaagcatttcactgactccacggtcattaccattgcgcatcgaataacttctgttcttgacagtgatatggttcta |
182 |
Q |
| |
|
||||||| | ||||||| || || || |||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41441982 |
tcttaggcaacatttcatggattctactgtcattaccattgcacatcgaataacttctgttcttgacagtgatttggttcta |
41441901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 234 - 356
Target Start/End: Complemental strand, 41441854 - 41441732
Alignment:
| Q |
234 |
tgtttcgttttctgaattttttgtctattgctgtagggcttattgaggagtatgactccccaaacacattgctagaggataagtcatcatcttttgctaa |
333 |
Q |
| |
|
||||| ||||||||| || |||| ||||| |||||| ||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||| |
|
|
| T |
41441854 |
tgttttgttttctgatgttgttgtgtattggtgtaggacttgttgaggagtatgactccccaacgacattgttagaggataagtcatcatcttttgttaa |
41441755 |
T |
|
| Q |
334 |
gcttgttgcagagtataccatga |
356 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
41441754 |
gcttgttgcagagtataccatga |
41441732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 32117884 - 32117724
Alignment:
| Q |
9 |
ggtagggttctgcttaagaagagcaaga---ttttggtgcttgatgaagcaactgcttcggttgatacagctacagataatttgattcagcaaactctta |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||| || |||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
32117884 |
ggtagggttctgcttaagaagagcaagaagattttggtgcttgatgaagccactgcatcagttgatacagctacagataatttgtttcagccaactctta |
32117785 |
T |
|
| Q |
106 |
ggaagcatttcactgactccacggtcattaccattgcgcatcgaataacttctgttcttga |
166 |
Q |
| |
|
| |||||||||||||||| || ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32117784 |
tgcagcatttcactgactctacctacattaccattgcgcatcgaataacttccattcttga |
32117724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 39 - 189
Target Start/End: Complemental strand, 22746164 - 22746014
Alignment:
| Q |
39 |
ttggtgcttgatgaagcaactgcttcggttgatacagctacagataatttgattcagcaaactcttaggaagcatttcactgactccacggtcattacca |
138 |
Q |
| |
|
||||| || |||||||| ||||| || ||||| || ||||| ||||||||||| |||||||||||| | | ||||||||||| | ||| |||||||| | |
|
|
| T |
22746164 |
ttggttctagatgaagccactgcatcagttgacacggctaccgataatttgatacagcaaactcttcgacaacatttcactgattgcacagtcattacaa |
22746065 |
T |
|
| Q |
139 |
ttgcgcatcgaataacttctgttcttgacagtgatatggttctacttctta |
189 |
Q |
| |
|
|||| ||||||| |||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
22746064 |
ttgcacatcgaaaaacttctgttattgacagtgatatggttctactactta |
22746014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 22666106 - 22665940
Alignment:
| Q |
15 |
gttctgcttaagaagagcaagattttggtgcttgatgaagcaactgcttcggttgatacagctacagataatttgattcagcaaactcttaggaagcatt |
114 |
Q |
| |
|
||||| |||||||| |||||||| |||||||| |||||||||||||| || |||||||| || ||||||||| | ||||||||||| ||| | | |||| |
|
|
| T |
22666106 |
gttctacttaagaaaagcaagatcttggtgctcgatgaagcaactgcatcagttgatacggcaacagataatattattcagcaaacaattaagcaacatt |
22666007 |
T |
|
| Q |
115 |
tcactgactccacggtcattaccattgcgcatcgaataacttctgttcttgacagtgatatggttct |
181 |
Q |
| |
|
|| | || | ||| |||||||||||||| ||| |||| ||||| | |||||||| || |||||||| |
|
|
| T |
22666006 |
tctcagattgcacagtcattaccattgctcatagaatcacttcaatccttgacagcgacatggttct |
22665940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 22722997 - 22722831
Alignment:
| Q |
15 |
gttctgcttaagaagagcaagattttggtgcttgatgaagcaactgcttcggttgatacagctacagataatttgattcagcaaactcttaggaagcatt |
114 |
Q |
| |
|
||||| |||||||| |||||||| |||||||| |||||||||||||| || |||||||| || ||||||||| | ||||||||||| ||| | | |||| |
|
|
| T |
22722997 |
gttctacttaagaaaagcaagatcttggtgctcgatgaagcaactgcatcagttgatacggcaacagataatattattcagcaaacagttaagcaacatt |
22722898 |
T |
|
| Q |
115 |
tcactgactccacggtcattaccattgcgcatcgaataacttctgttcttgacagtgatatggttct |
181 |
Q |
| |
|
|| | || | ||| |||||||||||||| ||| |||| ||||| | |||||||| || |||||||| |
|
|
| T |
22722897 |
tctcagattgcacagtcattaccattgctcatagaatcacttcaatccttgacagcgacatggttct |
22722831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 22744399 - 22744541
Alignment:
| Q |
15 |
gttctgcttaagaagagcaagattttggtgcttgatgaagcaactgcttcggttgatacagctacagataatttgattcagcaaactcttaggaagcatt |
114 |
Q |
| |
|
||||| |||||||| ||||| |||||||| ||||||||||| ||||| || ||||| ||||||||||||||| | ||||| ||||| |||| ||| |||| |
|
|
| T |
22744399 |
gttctccttaagaaaagcaaaattttggttcttgatgaagctactgcatcagttgacacagctacagataatattattcaacaaacacttaagaaacatt |
22744498 |
T |
|
| Q |
115 |
tcactgactccacggtcattaccattgcgcatcgaataacttc |
157 |
Q |
| |
|
| |||| | ||| |||||||||||||| ||| |||| ||||| |
|
|
| T |
22744499 |
tttctgattgcacagtcattaccattgctcatagaatcacttc |
22744541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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