View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15456_low_3 (Length: 661)
Name: NF15456_low_3
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 612; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 18 - 645
Target Start/End: Original strand, 2461058 - 2461685
Alignment:
| Q |
18 |
ttttcatggttcaaggaatattccatcggtgataaacttgatcgaggcttcaagaggaatcaagaagcatgacgcactttgtgtctatgcgatgcatctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2461058 |
ttttcatggttcaaggaatattccatcggtgataaacttgatcgaggcttcaagaggaatcaagaagcatgacgcactttgtgtctatgcgatgcatctt |
2461157 |
T |
|
| Q |
118 |
aaagaattttgtgagaggtcctcatcgatactaatggcacaaaaggtaagacaaaatgggttgccgttttgggataaaggtcgccatggagattctgtcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2461158 |
aaagaattttgtgagaggtcctcatcgatactaatggcacaaaaggtaagacaaaatgggttgccgttttgggataaaggtcgccatggagattctgtcc |
2461257 |
T |
|
| Q |
218 |
atgttattgtggcatttgaggcttaccaaaaactaagtcaagtgtgtgtccggccaatgatagcaatttcatcaatggcgaacattcatgaagacatttg |
317 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2461258 |
atgttattgtggcgtttgaggcttaccaaaaactaagtcaagtgtgtgtccggccaatgatagcaatttcatcaatggcgaacattcatgaagacatttg |
2461357 |
T |
|
| Q |
318 |
tgcaactgctgatagaaagagagccgcagtcatcattcttccatttcataagcaacaaagattagacggttcactaggcattataagaaatgattttcga |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2461358 |
tgcaactgctgatagaaagagagccgcagtcatcattcttccatttcataagcaacaaagattagacggttcactaggcattataagaaatgattttcga |
2461457 |
T |
|
| Q |
418 |
ctggttaacaaaagggtactcgagcatgcaccatgctcagttggaatttttgttgatcgtgggctcggtggttcatgtcatgtgtctgcaagtaatgttt |
517 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2461458 |
ctggttaacaaaagggtactcgagcatgcttcatgctcagttggaatttttgttgatcgtgggctcggtggttcatgtcatgtgtctgcaagtaatgttt |
2461557 |
T |
|
| Q |
518 |
cctattgcattgccgtgcttttctttggcggtggtgatgaccatgaagctcttgcttatggagcccgtatggccgaacaccctggcatacgattagtggt |
617 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2461558 |
cctattgcattgctgtgcttttctttggcggtggtgatgaccatgaagctcttgcttatggagcccgtatggccgaacaccctggcatacgattagtggt |
2461657 |
T |
|
| Q |
618 |
tattcgcttcttagtggaacctaatatt |
645 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
2461658 |
tattcgcttcttagtggaacctaatatt |
2461685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 22 - 645
Target Start/End: Original strand, 2450046 - 2450669
Alignment:
| Q |
22 |
catggttcaaggaatattccatcggtgataaacttgatcgaggcttcaagaggaatcaagaagcatgacgcactttgtgtctatgcgatgcatcttaaag |
121 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
2450046 |
catggttcaaggaatattccatcattgataaacttgatcgaggcttcaagaggaatcaagaagcatgacgcactttgtgtctatgcaatgcaccttaaag |
2450145 |
T |
|
| Q |
122 |
aattttgtgagaggtcctcatcgatactaatggcacaaaaggtaagacaaaatgggttgccgttttgggataaaggtcgccatggagattctgtccatgt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
2450146 |
aattttgtgagaggtcctcatcgatactaatggcacaaaaggtaagacaaaatgggttgccgttttgggataaaggtcgccatggagattctctccatgt |
2450245 |
T |
|
| Q |
222 |
tattgtggcatttgaggcttaccaaaaactaagtcaagtgtgtgtccggccaatgatagcaatttcatcaatggcgaacattcatgaagacatttgtgca |
321 |
Q |
| |
|
||||||||| || |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| || |
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|
| T |
2450246 |
tattgtggcgttcgaggcttaccaaaaactaagccaagtgtttgtccggccaatgatagcaatttcatcgatggcgaacattcatgaagacatctgtaca |
2450345 |
T |
|
| Q |
322 |
actgctgatagaaagagagccgcagtcatcattcttccatttcataagcaacaaagattagacggttcactaggcattataagaaatgattttcgactgg |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||| ||| |
|
|
| T |
2450346 |
actgctgatagaaagagagccgcagtcatcattcttccatttcataagcaacaaagagtagacggttcactagacattataagaaacgattttcgtttgg |
2450445 |
T |
|
| Q |
422 |
ttaacaaaagggtactcgagcatgcaccatgctcagttggaatttttgttgatcgtgggctcggtggttcatgtcatgtgtctgcaagtaatgtttccta |
521 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2450446 |
ttaacaaaagggtactagagcatgcaccgtgctcagttggaatttttgttgatcgtgggcttggtggttcatgtcatgtgtctgcaagtaacgtttccta |
2450545 |
T |
|
| Q |
522 |
ttgcattgccgtgcttttctttggcggtggtgatgaccatgaagctcttgcttatggagcccgtatggccgaacaccctggcatacgattagtggttatt |
621 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2450546 |
ttgcattgctgtgcttttctttggtggtggtgatgaccgtgaagctcttgcttatggagctcgtatggccgaacaccctggcatacaattagtggttatt |
2450645 |
T |
|
| Q |
622 |
cgcttcttagtggaacctaatatt |
645 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
2450646 |
cacttcttagtggaacctaatatt |
2450669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 22 - 645
Target Start/End: Original strand, 2445285 - 2445908
Alignment:
| Q |
22 |
catggttcaaggaatattccatcggtgataaacttgatcgaggcttcaagaggaatcaagaagcatgacgcactttgtgtctatgcgatgcatcttaaag |
121 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||| |
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|
| T |
2445285 |
catggtgcaaggaatattccgtcggtgataaacttgatcgaggcttcaagaggaatcaagaagcgcgacgcactttgtgtgtatgcaatgcaccttaaag |
2445384 |
T |
|
| Q |
122 |
aattttgtgagaggtcctcatcgatactaatggcacaaaaggtaagacaaaatgggttgccgttttgggataaaggtcgccatggagattctgtccatgt |
221 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| |||||| |||||| |||| |||||||| |||||| ||||||||| || || |||||||| |||||| |
|
|
| T |
2445385 |
aattttccgagagatcctcatcgatactaatggtacaaaaagtaagaaaaaacgggttgccattttggaataaaggtcaccgtgcagattctgaccatgt |
2445484 |
T |
|
| Q |
222 |
tattgtggcatttgaggcttaccaaaaactaagtcaagtgtgtgtccggccaatgatagcaatttcatcaatggcgaacattcatgaagacatttgtgca |
321 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||| || |||||| ||||||| || |||||||| |||||||| |||||||| ||||| |
|
|
| T |
2445485 |
tattgtggcatttgaggcttaccagaaactaagtcaagtttgtgttcgtccaatggtagcaatctcctcaatggctaacattcacgaagacatatgtgct |
2445584 |
T |
|
| Q |
322 |
actgctgatagaaagagagccgcagtcatcattcttccatttcataagcaacaaagattagacggttcactaggcattataagaaatgattttcgactgg |
421 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||| ||||| |||| ||||||||||||||| |||||||||| | ||| |||||||||||||||| | | |
|
|
| T |
2445585 |
accgctgaaagaaagagagccgcagtcatcattctcccattccatatgcaacaaagattagatggttcactagacgttacaagaaatgattttcgatttg |
2445684 |
T |
|
| Q |
422 |
ttaacaaaagggtactcgagcatgcaccatgctcagttggaatttttgttgatcgtgggctcggtggttcatgtcatgtgtctgcaagtaatgtttccta |
521 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| |||||||||||||||||||||||||||| || |
|
|
| T |
2445685 |
ttaacaaaagggtactcgagcatgcaccatgctcagttggaatttttgttgatcgcggacttggtggtacatgtcatgtgtctgcaagtaatgtttctta |
2445784 |
T |
|
| Q |
522 |
ttgcattgccgtgcttttctttggcggtggtgatgaccatgaagctcttgcttatggagcccgtatggccgaacaccctggcatacgattagtggttatt |
621 |
Q |
| |
|
||| | || |||||||||||||| ||||||||||||| ||||||||||||||| ||||| |||| |||||| |||||||||||| |||||||| ||||| |
|
|
| T |
2445785 |
ttgtgtggctgtgcttttctttggtggtggtgatgaccgtgaagctcttgcttacggagctcgtacggccgagcaccctggcataagattagtgattatt |
2445884 |
T |
|
| Q |
622 |
cgcttcttagtggaacctaatatt |
645 |
Q |
| |
|
||||||||||||||| ||| |||| |
|
|
| T |
2445885 |
cgcttcttagtggaatctactatt |
2445908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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