View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_low_38 (Length: 313)
Name: NF15456_low_38
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 2699579 - 2699293
Alignment:
| Q |
17 |
aataacaggattatatcttttgtctcgaaatacaggcgatggagggaa---tgaaaagattatgatggtgataatattaacttctctagcggggttaatt |
113 |
Q |
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| T |
2699579 |
aataacaggattatatcttttgtctcgaaatacaggcgatggagggaaaaatgaaaagattatgatggtgataatattaacttctctagcggggttaatt |
2699480 |
T |
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| Q |
114 |
tgcataggaatcattgtattgttggtatggaggtacaagagacgactcaaaggtgaaacattcatattcatattcatcacacctannnnnnnnccctatc |
213 |
Q |
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| T |
2699479 |
tgcataggaatcattgtattgttggtatggaggtacaagagacaactcaaaggtgaaacattcatattcatattcatcacacctattttttttccctatc |
2699380 |
T |
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| Q |
214 |
agatgattgataaatgatattaacttgtgcatattttttccttttcttcagcttcatgttgcaaaaatagtgatgtactaccggtct |
300 |
Q |
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| T |
2699379 |
agatgattgataaatgatattaacttgtacatattttttccttttcttcagcttcatgttccaaaaatagtgatgtactaccggtct |
2699293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 69 - 185
Target Start/End: Complemental strand, 2691829 - 2691709
Alignment:
| Q |
69 |
aagattatgatggtgataatattaacttctctagcggggttaatttgcataggaatcattgtattgttggtatggaggtacaagagacgactcaaaggtg |
168 |
Q |
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| T |
2691829 |
aagattatgattgtgataatattaactgttatagcagggttaatctgcctaggaatattggtattgttggtatggaggtacaagacaaaactcaaaggtg |
2691730 |
T |
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| Q |
169 |
aaa----cattcatattcata |
185 |
Q |
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| T |
2691729 |
aaatactcattcatattcata |
2691709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 14520956 - 14520885
Alignment:
| Q |
74 |
tatgatggtgataatattaacttctctagcggggttaatttgcataggaatcattgtattgttggtatggag |
145 |
Q |
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| T |
14520956 |
tatgattgtgattatatcaactgctgtaacagggttaatctgcctaggaatctttgtattgttggtatggag |
14520885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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