View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_low_39 (Length: 312)
Name: NF15456_low_39
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 13833674 - 13833966
Alignment:
| Q |
1 |
caagatcagaggcgagatcggcatgagtcaagaagtctgccttccaaggcaccaagggacaccaagggaaaggagcaggaagggactaacgaaagaacat |
100 |
Q |
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||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||| |
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| T |
13833674 |
caagatcagagacgagatcggcatgagccaagaagtctgccttccaaggcaccaagggacaccaagggaaatgagaaggaagggactaacgaaaggacat |
13833773 |
T |
|
| Q |
101 |
acgagtcaccaacgcacaccattgataaccgacaaaattgtaggttattaccttgcacttatcccccatagtctgggaaataaagtgattgcattgccta |
200 |
Q |
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||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13833774 |
acgagccaccaacgcacaccattgataactgacaaacttgtaggttattaccttgcacttatcatccatagtctgggaaataaagtgattgcattgccta |
13833873 |
T |
|
| Q |
201 |
agacatctaattagtgacaatttataaactcgggagtttatgcttaattagttatttggggttagttttgtaggacttatcatttggtttttt |
293 |
Q |
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| T |
13833874 |
agacatctaatcagtgacaatttagaaactcgggagtttatgcttaattagttatttggggttagttttgtaggacttatcatttggtttttt |
13833966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 47900892 - 47900847
Alignment:
| Q |
121 |
attgataaccgacaaaattgtaggttattaccttgcacttatcccc |
166 |
Q |
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| T |
47900892 |
attgataaccgacaaatttgtaggttatcacgttgcacttatcccc |
47900847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 25992481 - 25992442
Alignment:
| Q |
184 |
agtgattgcattgcctaagacatctaattagtgacaattt |
223 |
Q |
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| T |
25992481 |
agtgattgcattgcctaagacatctaattggtgactattt |
25992442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 225
Target Start/End: Complemental strand, 1781527 - 1781438
Alignment:
| Q |
138 |
ttgtaggttattaccttgcacttatcccccatagtc--tgggaaataaagtgattgcattgcctaagacatctaattagtgacaatttat |
225 |
Q |
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||||||||||||| |||||||||||||||||| || | ||||| ||||||||| || ||||| ||||||||| |||||| |||||| |
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| T |
1781527 |
ttgtaggttattatattgcacttatcccccataatcgataagaaattaagtgattgaatggcctataacatctaatcagtgaccatttat |
1781438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 25136756 - 25136788
Alignment:
| Q |
122 |
ttgataaccgacaaaattgtaggttattacctt |
154 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
25136756 |
ttgataaccgacaaaaatgtaggttattacctt |
25136788 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 42525202 - 42525246
Alignment:
| Q |
121 |
attgataaccgacaaaattgtaggttattaccttgcacttatcccc |
166 |
Q |
| |
|
|||||||||| ||||||| || |||||||||||||||||||||||| |
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| T |
42525202 |
attgataacctacaaaat-gttggttattaccttgcacttatcccc |
42525246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 154
Target Start/End: Original strand, 28870943 - 28870976
Alignment:
| Q |
121 |
attgataaccgacaaaattgtaggttattacctt |
154 |
Q |
| |
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||||||||||||||||| |||||||||||||||| |
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| T |
28870943 |
attgataaccgacaaaaatgtaggttattacctt |
28870976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 154
Target Start/End: Complemental strand, 9354042 - 9354009
Alignment:
| Q |
121 |
attgataaccgacaaaattgtaggttattacctt |
154 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
9354042 |
attgataaccgacaaaaatgtaggttattacctt |
9354009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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