View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15456_low_40 (Length: 308)

Name: NF15456_low_40
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15456_low_40
NF15456_low_40
[»] chr5 (34 HSPs)
chr5 (1-264)||(15504085-15504348)
chr5 (173-264)||(2476501-2476592)
chr5 (173-258)||(1672375-1672460)
chr5 (173-298)||(21069123-21069248)
chr5 (173-264)||(35469039-35469130)
chr5 (173-259)||(7161972-7162058)
chr5 (173-290)||(33006996-33007113)
chr5 (173-264)||(14832699-14832790)
chr5 (173-276)||(34846470-34846573)
chr5 (173-259)||(13942641-13942727)
chr5 (173-259)||(15675454-15675540)
chr5 (173-259)||(37552055-37552141)
chr5 (173-259)||(37654885-37654971)
chr5 (173-296)||(8214527-8214651)
chr5 (172-259)||(16567932-16568019)
chr5 (173-264)||(43228531-43228622)
chr5 (172-258)||(12267270-12267356)
chr5 (173-264)||(32953556-32953647)
chr5 (173-259)||(37779784-37779870)
chr5 (207-264)||(36234477-36234534)
chr5 (173-259)||(37607577-37607663)
chr5 (236-296)||(6900850-6900910)
chr5 (175-259)||(6900908-6900992)
chr5 (173-264)||(34444102-34444194)
chr5 (174-258)||(30249107-30249191)
chr5 (173-224)||(2985868-2985919)
chr5 (224-296)||(39605781-39605853)
chr5 (172-220)||(15917470-15917518)
chr5 (173-224)||(204117-204168)
chr5 (173-220)||(4306673-4306720)
chr5 (173-220)||(15497447-15497494)
chr5 (208-258)||(767440-767490)
chr5 (170-220)||(25034988-25035038)
chr5 (245-294)||(17192606-17192655)
[»] chr7 (23 HSPs)
chr7 (173-298)||(3012424-3012549)
chr7 (173-292)||(814861-814980)
chr7 (173-263)||(5991308-5991398)
chr7 (173-259)||(22206574-22206660)
chr7 (173-259)||(22228079-22228165)
chr7 (173-290)||(26722847-26722964)
chr7 (176-259)||(25688102-25688185)
chr7 (180-298)||(38128876-38128994)
chr7 (173-264)||(35300316-35300407)
chr7 (174-264)||(21932631-21932721)
chr7 (172-259)||(28693890-28693977)
chr7 (177-259)||(7873112-7873194)
chr7 (173-259)||(30852451-30852537)
chr7 (174-259)||(4843461-4843546)
chr7 (174-258)||(19377554-19377638)
chr7 (189-254)||(41759531-41759596)
chr7 (185-258)||(42439462-42439535)
chr7 (208-264)||(23704392-23704448)
chr7 (172-220)||(27387164-27387212)
chr7 (173-220)||(19400251-19400298)
chr7 (174-264)||(21688285-21688375)
chr7 (173-296)||(41862234-41862357)
chr7 (173-220)||(45197910-45197957)
[»] chr1 (24 HSPs)
chr1 (179-296)||(49898492-49898609)
chr1 (174-290)||(33468860-33468976)
chr1 (173-290)||(31844529-31844646)
chr1 (173-264)||(14727466-14727557)
chr1 (173-263)||(4774109-4774199)
chr1 (173-264)||(25007600-25007691)
chr1 (176-264)||(37153881-37153969)
chr1 (173-296)||(34459225-34459348)
chr1 (173-264)||(44305548-44305639)
chr1 (173-290)||(8239382-8239499)
chr1 (173-258)||(1428307-1428392)
chr1 (173-296)||(9527161-9527284)
chr1 (173-264)||(27460815-27460905)
chr1 (173-259)||(24646189-24646275)
chr1 (173-290)||(6331775-6331892)
chr1 (173-264)||(27583905-27583992)
chr1 (174-251)||(25011426-25011503)
chr1 (173-293)||(6801972-6802092)
chr1 (176-259)||(24745548-24745629)
chr1 (176-259)||(4641928-4642011)
chr1 (236-296)||(4642009-4642069)
chr1 (224-263)||(42817704-42817743)
chr1 (174-259)||(44238734-44238815)
chr1 (236-288)||(44238813-44238865)
[»] chr4 (30 HSPs)
chr4 (172-259)||(11826935-11827022)
chr4 (174-290)||(10058627-10058743)
chr4 (176-259)||(31364256-31364339)
chr4 (171-258)||(4728701-4728788)
chr4 (173-259)||(2017325-2017411)
chr4 (173-259)||(9003697-9003783)
chr4 (174-264)||(10715793-10715883)
chr4 (174-264)||(10929563-10929653)
chr4 (173-259)||(46645745-46645831)
chr4 (173-259)||(52373896-52373982)
chr4 (179-259)||(2521792-2521872)
chr4 (172-268)||(32006016-32006112)
chr4 (173-264)||(4552322-4552413)
chr4 (173-259)||(14044466-14044552)
chr4 (173-293)||(25237696-25237816)
chr4 (172-258)||(40969367-40969453)
chr4 (176-264)||(43003075-43003163)
chr4 (176-259)||(32828285-32828368)
chr4 (174-259)||(9694208-9694291)
chr4 (173-258)||(41972330-41972415)
chr4 (193-258)||(49745199-49745264)
chr4 (208-259)||(50100012-50100063)
chr4 (173-258)||(2576315-2576400)
chr4 (172-220)||(37236116-37236164)
chr4 (173-224)||(6255433-6255484)
chr4 (173-212)||(15034358-15034397)
chr4 (173-251)||(50384024-50384101)
chr4 (173-220)||(17555465-17555512)
chr4 (239-296)||(8901919-8901976)
chr4 (175-220)||(42843981-42844026)
[»] chr8 (12 HSPs)
chr8 (174-264)||(36406378-36406468)
chr8 (173-290)||(24965122-24965239)
chr8 (176-258)||(27321753-27321835)
chr8 (173-259)||(38214867-38214953)
chr8 (173-268)||(34282748-34282843)
chr8 (172-258)||(28928202-28928288)
chr8 (176-259)||(35384256-35384339)
chr8 (173-264)||(3383907-3383998)
chr8 (189-258)||(13243273-13243342)
chr8 (208-296)||(31500736-31500824)
chr8 (176-220)||(10014312-10014356)
chr8 (173-220)||(17839598-17839645)
[»] chr3 (21 HSPs)
chr3 (173-277)||(37516750-37516854)
chr3 (174-290)||(26370931-26371047)
chr3 (173-264)||(41218243-41218334)
chr3 (176-264)||(7501098-7501186)
chr3 (173-264)||(28311419-28311510)
chr3 (173-259)||(53987978-53988065)
chr3 (174-264)||(14461207-14461297)
chr3 (173-259)||(12909975-12910059)
chr3 (172-259)||(26278477-26278564)
chr3 (176-258)||(33178983-33179065)
chr3 (173-290)||(25391733-25391850)
chr3 (173-264)||(43700081-43700172)
chr3 (176-264)||(53652040-53652128)
chr3 (173-264)||(44047726-44047816)
chr3 (217-259)||(9600464-9600506)
chr3 (172-220)||(6891515-6891563)
chr3 (173-220)||(19269162-19269209)
chr3 (173-220)||(31989298-31989345)
chr3 (173-232)||(35077641-35077700)
chr3 (173-220)||(48757334-48757381)
chr3 (207-259)||(41358541-41358593)
[»] scaffold0638 (1 HSPs)
scaffold0638 (173-259)||(4219-4305)
[»] chr2 (21 HSPs)
chr2 (173-277)||(2475930-2476034)
chr2 (173-258)||(12000700-12000785)
chr2 (173-264)||(29257503-29257594)
chr2 (173-258)||(13203910-13203995)
chr2 (173-298)||(17148895-17149024)
chr2 (173-296)||(17249435-17249558)
chr2 (173-276)||(22572609-22572712)
chr2 (173-264)||(41114757-41114848)
chr2 (172-298)||(45444339-45444466)
chr2 (173-258)||(15651384-15651468)
chr2 (176-296)||(16220919-16221039)
chr2 (205-264)||(18299062-18299121)
chr2 (173-264)||(303979-304070)
chr2 (173-264)||(41010649-41010740)
chr2 (173-259)||(33909234-33909320)
chr2 (173-264)||(6799773-6799864)
chr2 (175-224)||(26655688-26655737)
chr2 (224-296)||(34756828-34756900)
chr2 (174-220)||(42755571-42755617)
chr2 (236-298)||(304063-304125)
chr2 (236-296)||(15651324-15651384)
[»] chr6 (20 HSPs)
chr6 (180-264)||(9696192-9696276)
chr6 (173-264)||(2941359-2941450)
chr6 (173-259)||(339480-339566)
chr6 (174-259)||(10397698-10397783)
chr6 (173-258)||(28614292-28614377)
chr6 (174-259)||(2960814-2960899)
chr6 (175-259)||(1780933-1781017)
chr6 (173-264)||(14938810-14938901)
chr6 (189-264)||(34248917-34248992)
chr6 (174-264)||(23663648-23663738)
chr6 (175-264)||(15529083-15529172)
chr6 (173-258)||(31188200-31188285)
chr6 (177-264)||(9046807-9046894)
chr6 (172-258)||(15122186-15122272)
chr6 (174-258)||(31200045-31200130)
chr6 (184-264)||(2836066-2836146)
chr6 (176-259)||(34188940-34189023)
chr6 (173-218)||(26218297-26218342)
chr6 (173-220)||(34385004-34385051)
chr6 (172-220)||(21148895-21148943)
[»] scaffold0618 (1 HSPs)
scaffold0618 (173-264)||(1832-1923)
[»] scaffold0075 (2 HSPs)
scaffold0075 (173-264)||(11660-11751)
scaffold0075 (178-259)||(7052-7132)
[»] scaffold0021 (2 HSPs)
scaffold0021 (173-298)||(112092-112218)
scaffold0021 (174-259)||(109192-109278)


Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 15504348 - 15504085
Alignment:
Q  1 agagggaaaataatgggatttaaagtctattctccttctaaatcaacttataatccaaaattaattttgaattggttcttgattgcaccttagttccaac 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15504348 agagggaaaataatgggatttgaagtctattctccttctaaatcaacttatagtccaaaattaattttgaattggttcttgattgcaccttagttccaac 15504249  T
Q  101 atctttatcaaattttatcttgccttctatgtattttgttggcgtggataaacaatatgcaatacttgtggacagtggcggagccagaaattatatagag 200  Q
    ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15504248 atctttatcaaattttatcttgcattctaagtattttgttgccgtggataaacaatatgcaattcttgtggacagtggcggagccagaaattatatagag 15504149  T
Q  201 cctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  15504148 cctcgacaaaaaatttatcgcaaaatgttacttccttcctgcgaataatttcacatttcctgca 15504085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 2476592 - 2476501
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||| |||||||||||||||||| ||||    
T  2476592 cagtggcggagccagaaattatatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgca 2476501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 1672375 - 1672460
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacattt 258  Q
    |||||||||||||||||||| |||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  1672375 cagtggcggagccagaaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacattt 1672460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 173 - 298
Target Start/End: Complemental strand, 21069248 - 21069123
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatc 272  Q
    |||||| ||||||||||||| ||||||| || |||||||||||||||| |||| |||| ||||||||||  |||||||||||||||| |||| |||||||    
T  21069248 cagtggtggagccagaaattttatagagtctgggcaaaaaatttatcgcaaaacgttatttccttcctggaaataatttcacatttcctgcagatatatc 21069149  T
Q  273 tttcccgcagatcctaaaatcctatg 298  Q
    ||||| |  |||||||||||||||||    
T  21069148 tttcctgtggatcctaaaatcctatg 21069123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 35469130 - 35469039
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    ||||||| ||||||| |||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  35469130 cagtggctgagccaggaattttatagagcctgggcaaaaaatttatcgcaaaatgttacttccttcctgcgaataatttcacatttcctgca 35469039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 7161972 - 7162058
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    |||||||||||||||||||| |||||||||| ||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||    
T  7161972 cagtggcggagccagaaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcaaataatttcacatttc 7162058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 173 - 290
Target Start/End: Complemental strand, 33007113 - 33006996
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatc 272  Q
    ||||||||||||||| |||| ||||||| || |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| | |  |||||||    
T  33007113 cagtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggatatatc 33007014  T
Q  273 tttcccgcagatcctaaa 290  Q
    ||||| || || ||||||    
T  33007013 tttcctgcggaacctaaa 33006996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 14832699 - 14832790
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    |||||||||||||||||||| ||||||| || |||||||||||||||| ||||  |||||||||||||||||||||||||||||||| ||||    
T  14832699 cagtggcggagccagaaattttatagagtctgggcaaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttcctgca 14832790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 173 - 276
Target Start/End: Complemental strand, 34846573 - 34846470
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatc 272  Q
    ||||||||||||||| |||| |||||||||| | |||||||||||||| |||| ||||||||||||||||||||||||||||||||| | |  |||||||    
T  34846573 cagtggcggagccaggaattttatagagcctggacaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggatatatc 34846474  T
Q  273 tttc 276  Q
    ||||    
T  34846473 tttc 34846470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 13942641 - 13942727
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    |||||||||||||||||||| |||||||||| || |||||| |||||| |||| |||||||||||||||||||||||||||||||||    
T  13942641 cagtggcggagccagaaattttatagagcctgggtaaaaaaattatcgcaaaacgttacttccttcctgcgaataatttcacatttc 13942727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 15675540 - 15675454
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    |||||||||||| || |||| |||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  15675540 cagtggcggagctaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 15675454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 37552141 - 37552055
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    |||||| ||||||||||||| |||||||||| ||||||||| |||| | ||||||||||||||||||||||||||||||||||||||    
T  37552141 cagtggtggagccagaaattttatagagcctgggcaaaaaaattattgcaaaatgttacttccttcctgcgaataatttcacatttc 37552055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 37654971 - 37654885
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    |||||| ||||||||||||| |||||||||| ||||||||| |||| | ||||||||||||||||||||||||||||||||||||||    
T  37654971 cagtggtggagccagaaattttatagagcctgggcaaaaaaattattgcaaaatgttacttccttcctgcgaataatttcacatttc 37654885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 173 - 296
Target Start/End: Original strand, 8214527 - 8214651
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttct-tgcaaatatat 271  Q
    |||||||||| |||| ||||||| ||||||| || |||||| ||||||||||||||||| | ||||||||||||||||||| |||| | |||  ||||||    
T  8214527 cagtggcggaaccaggaattataaagagccttggtaaaaaaattatcgtaaaatgttacgtacttcctgcgaataatttcatatttgtctgcggatatat 8214626  T
Q  272 ctttcccgcagatcctaaaatccta 296  Q
    |||||| || |||||||||||||||    
T  8214627 ctttcctgcggatcctaaaatccta 8214651  T

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Target: chr5; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 172 - 259
Target Start/End: Complemental strand, 16568019 - 16567932
Alignment:
Q  172 acagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    |||||||||||| |||||||| |||||||| | ||||||||| |||||| |||||||||||||||||||| |||||||||||||||||    
T  16568019 acagtggcggagtcagaaattttatagagcttgggcaaaaaaattatcgcaaaatgttacttccttcctgggaataatttcacatttc 16567932  T

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Target: chr5; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 43228531 - 43228622
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    |||||||||||||||||||| |||||||||| ||||||||| | |||| ||||||||||| | |||||||||||||||||| ||||||||||    
T  43228531 cagtggcggagccagaaattttatagagcctgggcaaaaaactaatcgcaaaatgttactcctttcctgcgaataatttcatatttcttgca 43228622  T

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Target: chr5; HSP #17
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 12267270 - 12267356
Alignment:
Q  172 acagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacattt 258  Q
    ||||||||||||||||| ||| |||||||||| |||||||| ||||||| |||| ||||||||||||||| ||||||||||||||||    
T  12267270 acagtggcggagccagacattttatagagcctgggcaaaaagtttatcgcaaaacgttacttccttcctgtgaataatttcacattt 12267356  T

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Target: chr5; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 32953556 - 32953647
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    |||||||||||||  ||||| ||||||||||  |||||||| |||||| ||||||||||||||||||| |||||||||||||||||| ||||    
T  32953556 cagtggcggagccgtaaattttatagagcctgtgcaaaaaagttatcgcaaaatgttacttccttcctacgaataatttcacatttcctgca 32953647  T

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Target: chr5; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 37779870 - 37779784
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    ||||||||||  || ||||| |||||||| |  |||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  37779870 cagtggcggaaacataaattttatagagcttgtgcaaaaaaattatcgtaaaatgttacttccttccagcgaataatttcacatttc 37779784  T

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Target: chr5; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 36234477 - 36234534
Alignment:
Q  207 caaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  36234477 caaaaaatttatcgcaaaatgttacttccttcttgcgaataatttcacatttcttgca 36234534  T

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Target: chr5; HSP #21
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 37607663 - 37607577
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    ||||||||||  || ||||| |||||||| |  |||||||| ||||||||||||||||||||||||| || ||||||||||||||||    
T  37607663 cagtggcggaaacataaattttatagagcttgtgcaaaaaaattatcgtaaaatgttacttccttccagcaaataatttcacatttc 37607577  T

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Target: chr5; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 296
Target Start/End: Complemental strand, 6900910 - 6900850
Alignment:
Q  236 ttcctgcgaataatttcacatttcttgcaaatatatctttcccgcagatcctaaaatccta 296  Q
    |||||||| |||||||||||||||||||  ||||||||||||||| |||||||||||||||    
T  6900910 ttcctgcggataatttcacatttcttgcggatatatctttcccgcggatcctaaaatccta 6900850  T

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Target: chr5; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 259
Target Start/End: Complemental strand, 6900992 - 6900908
Alignment:
Q  175 gtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    ||||||||| ||||||||  ||||||  |  | ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  6900992 gtggcggagacagaaatttaatagagtatgagtaaaaaatttatcgcaaaatgttacttccttcatgcgaataatttcacatttc 6900908  T

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Target: chr5; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 34444194 - 34444102
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaat-ttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    |||||||||||| || |||| || ||||||| |||||||||  |||||| |||| |||||||||||||| |||||||||||||||||| ||||    
T  34444194 cagtggcggagctaggaattttagagagcctgggcaaaaaaaattatcgcaaaacgttacttccttcctacgaataatttcacatttcctgca 34444102  T

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Target: chr5; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 30249191 - 30249107
Alignment:
Q  174 agtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacattt 258  Q
    ||||| |||||||| |||| || |||| || |||||||||||||||| |||| ||| ||| |||||||| |||||||||||||||    
T  30249191 agtggtggagccaggaattttacagagtctgggcaaaaaatttatcgcaaaacgttgctttcttcctgcaaataatttcacattt 30249107  T

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Target: chr5; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 2985919 - 2985868
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaa 224  Q
    ||||||||||||||| ||||||||||||||| ||| ||||||||||||||||    
T  2985919 cagtggcggagccaggaattatatagagcctgggcgaaaaatttatcgtaaa 2985868  T

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Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 224 - 296
Target Start/End: Original strand, 39605781 - 39605853
Alignment:
Q  224 aatgttacttccttcctgcgaataatttcacatttcttgcaaatatatctttcccgcagatcctaaaatccta 296  Q
    ||||||||||| ||| |||| |||||| |||||||| |||  |||||||||||| || |||||||||||||||    
T  39605781 aatgttacttcattcatgcggataattgcacatttcctgcggatatatctttcctgcggatcctaaaatccta 39605853  T

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Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 15917518 - 15917470
Alignment:
Q  172 acagtggcggagccagaaattatatagagcctcggcaaaaaatttatcg 220  Q
    |||||||||||||||| ||||| ||||||||| ||| ||||||||||||    
T  15917518 acagtggcggagccagcaattacatagagcctaggcgaaaaatttatcg 15917470  T

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Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 204168 - 204117
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaa 224  Q
    ||||||||||| |||||||| |||||| ||| ||| ||||||||||||||||    
T  204168 cagtggcggagtcagaaattttatagaacctgggcgaaaaatttatcgtaaa 204117  T

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Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 4306673 - 4306720
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcg 220  Q
    ||||||||||||||| ||||| ||||||||| ||| ||||||||||||    
T  4306673 cagtggcggagccaggaattacatagagcctgggcgaaaaatttatcg 4306720  T

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Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 15497447 - 15497494
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcg 220  Q
    ||||||||||||||| ||||| ||||||||| ||| ||||||||||||    
T  15497447 cagtggcggagccaggaattacatagagcctgggcgaaaaatttatcg 15497494  T

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Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 258
Target Start/End: Complemental strand, 767490 - 767440
Alignment:
Q  208 aaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacattt 258  Q
    ||||||||||| | |||| ||||||| |||||||||||||||||| |||||    
T  767490 aaaaaatttattgcaaaacgttactttcttcctgcgaataatttctcattt 767440  T

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Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 25035038 - 25034988
Alignment:
Q  170 ggacagtggcggagccagaaattatatagagcctcggcaaaaaatttatcg 220  Q
    |||||||||||||| ||| ||||  ||||||||| ||||||||||||||||    
T  25035038 ggacagtggcggagtcaggaatttcatagagcctgggcaaaaaatttatcg 25034988  T

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Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 17192606 - 17192655
Alignment:
Q  245 ataatttcacatttcttgcaaatatatctttcccgcagatcctaaaatcc 294  Q
    ||||||||||||||  ||| ||||||||||||| || |||||||||||||    
T  17192606 ataatttcacattttctgcgaatatatctttcctgcggatcctaaaatcc 17192655  T

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Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 173 - 298
Target Start/End: Complemental strand, 3012549 - 3012424
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatc 272  Q
    |||||||||||||||||||| ||||||| || ||||||||| |||| | |||| ||||||||||||||| ||||||||||||||||| |||  |||||||    
T  3012549 cagtggcggagccagaaattttatagagtctgggcaaaaaaattattgcaaaacgttacttccttcctgtgaataatttcacatttcctgcggatatatc 3012450  T
Q  273 tttcccgcagatcctaaaatcctatg 298  Q
    ||||| || |||||||||||||||||    
T  3012449 tttcctgcggatcctaaaatcctatg 3012424  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 173 - 292
Target Start/End: Original strand, 814861 - 814980
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatc 272  Q
    ||||||||||||||| |||||||||||| || ||||||||| |||||| |||| |||||||| ||||||| |||||||||||||||  |||  |||||||    
T  814861 cagtggcggagccaggaattatatagagtctgggcaaaaaaattatcgcaaaacgttacttcattcctgctaataatttcacattttctgcggatatatc 814960  T
Q  273 tttcccgcagatcctaaaat 292  Q
    ||||  ||||||||||||||    
T  814961 tttcgtgcagatcctaaaat 814980  T

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Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 263
Target Start/End: Original strand, 5991308 - 5991398
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgc 263  Q
    ||||||||||| | |||||| |||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||    
T  5991308 cagtggcggagtcggaaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataattttacatttcttgc 5991398  T

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Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 22206574 - 22206660
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    |||||||||||| ||||||| |||||||||| ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  22206574 cagtggcggagcaagaaattttatagagcctgggcaagaaaattatcgcaaaatgttacttccttcctgcgaataatttcacatttc 22206660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 22228165 - 22228079
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    |||||||||||| ||||||| |||||||||| ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  22228165 cagtggcggagcaagaaattttatagagcctgggcaagaaaattatcgcaaaatgttacttccttcctgcgaataatttcacatttc 22228079  T

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Target: chr7; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 173 - 290
Target Start/End: Original strand, 26722847 - 26722964
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatc 272  Q
    ||||||| ||| ||| |||| |||||||| | |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |  |||||||    
T  26722847 cagtggcagagtcaggaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcttacggatatatc 26722946  T
Q  273 tttcccgcagatcctaaa 290  Q
    ||||| || || ||||||    
T  26722947 tttcctgcggaacctaaa 26722964  T

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Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 176 - 259
Target Start/End: Original strand, 25688102 - 25688185
Alignment:
Q  176 tggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    ||||||||||||||||| |||||||||| || |||||| ||||||||||||||||||||||| ||| |||||||||||||||||    
T  25688102 tggcggagccagaaattttatagagcctgggtaaaaaaattatcgtaaaatgttacttcctttctgtgaataatttcacatttc 25688185  T

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Target: chr7; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 180 - 298
Target Start/End: Original strand, 38128876 - 38128994
Alignment:
Q  180 ggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatctttcccg 279  Q
    ||||||||||||| |||| |  || |||||||| ||||||| |||| |||| |||||||||||  ||||||||||||||| |||| |||||||||||| |    
T  38128876 ggagccagaaattttataaaatctaggcaaaaattttatcgcaaaacgttatttccttcctgcagataatttcacatttcctgcacatatatctttcctg 38128975  T
Q  280 cagatcctaaaatcctatg 298  Q
    | |||||||||||||||||    
T  38128976 cggatcctaaaatcctatg 38128994  T

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Target: chr7; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 35300316 - 35300407
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    ||||||||||||||| |||| |||||||| | || |||||||||||||||||| |||||||||||| | |||||||||||||||||| ||||    
T  35300316 cagtggcggagccaggaattttatagagcttgggaaaaaaatttatcgtaaaacgttacttccttcttacgaataatttcacatttcctgca 35300407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 264
Target Start/End: Original strand, 21932631 - 21932721
Alignment:
Q  174 agtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    |||||||||| ||| |||| ||||||| || |||||||||||||||| ||||||||||||| |||||||||||||||||| ||||| ||||    
T  21932631 agtggcggagtcaggaattttatagagtctgggcaaaaaatttatcgcaaaatgttacttctttcctgcgaataatttcatatttcctgca 21932721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 172 - 259
Target Start/End: Original strand, 28693890 - 28693977
Alignment:
Q  172 acagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    |||||| ||||||||| |||| |||||||||| ||||||||| |||||| ||||  |||||||||| |||||||||||||||||||||    
T  28693890 acagtgacggagccaggaattttatagagcctgggcaaaaaaattatcgcaaaactttacttcctttctgcgaataatttcacatttc 28693977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 259
Target Start/End: Original strand, 7873112 - 7873194
Alignment:
Q  177 ggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    ||||||||| |||||| ||||||| || ||||||||| |||||| |||||||||||||||||| || ||||||||||||||||    
T  7873112 ggcggagcctgaaattttatagagtctgggcaaaaaaattatcgcaaaatgttacttccttcccgctaataatttcacatttc 7873194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 30852537 - 30852451
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    ||||| |||||||||||||| | ||||  || || |||||| |||||| |||||||| |||||||||||||||||||||||||||||    
T  30852537 cagtgacggagccagaaattttttagaatctggggaaaaaaattatcgcaaaatgttgcttccttcctgcgaataatttcacatttc 30852451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 4843546 - 4843461
Alignment:
Q  174 agtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    |||||||||| ||  |||| |||||||| |  ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||    
T  4843546 agtggcggagacaagaattttatagagcttgagcaaaaaatttatcgcaaaacgttacttctttcctgcgaataatttcacatttc 4843461  T

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Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 19377638 - 19377554
Alignment:
Q  174 agtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacattt 258  Q
    |||||| ||||||  |||||||||||| || ||||||||| |||||| |||||||||  || |||||||||||||||||||||||    
T  19377638 agtggcagagccaagaattatatagagtctgggcaaaaaaattatcgcaaaatgttatgtctttcctgcgaataatttcacattt 19377554  T

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Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 41759531 - 41759596
Alignment:
Q  189 aattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcac 254  Q
    |||| ||||||| || |||||||||||||||| | || ||||||||||||||||||||||||||||    
T  41759531 aattttatagagtctgggcaaaaaatttatcgcacaacgttacttccttcctgcgaataatttcac 41759596  T

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Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 42439462 - 42439535
Alignment:
Q  185 cagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacattt 258  Q
    |||||||| ||||| | || |||||||||||||||| |||| |||||||| || || |||||||||||||||||    
T  42439462 cagaaattttatagggtctgggcaaaaaatttatcgcaaaacgttacttcttttctacgaataatttcacattt 42439535  T

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Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 23704392 - 23704448
Alignment:
Q  208 aaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    |||||||||||||||||| |||||||| ||| |||||||||||| ||||||| ||||    
T  23704392 aaaaaatttatcgtaaaacgttacttctttcttgcgaataattttacatttcctgca 23704448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 27387164 - 27387212
Alignment:
Q  172 acagtggcggagccagaaattatatagagcctcggcaaaaaatttatcg 220  Q
    |||||||||||||||||||||  ||||||||| ||||||||||||||||    
T  27387164 acagtggcggagccagaaatttcatagagcctgggcaaaaaatttatcg 27387212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 19400298 - 19400251
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcg 220  Q
    |||||||||||||||||||| |||||||||| |||||||| |||||||    
T  19400298 cagtggcggagccagaaattttatagagcctgggcaaaaagtttatcg 19400251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 21688375 - 21688285
Alignment:
Q  174 agtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    |||||||||| ||| |||| ||||||  || |||||||||||||||  ||||||||||| |  | ||| ||||||||||||||||| ||||    
T  21688375 agtggcggagtcaggaattttatagaatctaggcaaaaaatttatcacaaaatgttactgctattctgtgaataatttcacatttcctgca 21688285  T

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Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 296
Target Start/End: Original strand, 41862234 - 41862357
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatc 272  Q
    ||||||||||||||| |||| ||||||  ||  | ||||||||||||| ||||   |||||| || ||||| ||||||  ||||||| |||  ||||| |    
T  41862234 cagtggcggagccaggaattttatagaatctgagtaaaaaatttatcgcaaaacaatacttcatttctgcggataattatacatttcctgcggatatacc 41862333  T
Q  273 tttcccgcagatcctaaaatccta 296  Q
    ||||| |  |||||||||||||||    
T  41862334 tttcctgtggatcctaaaatccta 41862357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 45197957 - 45197910
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcg 220  Q
    |||||||||||||||||||| |||||||  | ||||||||||||||||    
T  45197957 cagtggcggagccagaaattctatagagtgtgggcaaaaaatttatcg 45197910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 179 - 296
Target Start/End: Complemental strand, 49898609 - 49898492
Alignment:
Q  179 cggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatctttccc 278  Q
    |||||||||||||||||||||| || |||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||   |||||||||||      
T  49898609 cggagccagaaattatatagagtctgggcaaaaaatttatcgcaaaatgttacgtccttcctgcgaataatttcacatttcctgtggatatatctttctt 49898510  T
Q  279 gcagatcctaaaatccta 296  Q
    || |||||||||||||||    
T  49898509 gcggatcctaaaatccta 49898492  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 174 - 290
Target Start/End: Original strand, 33468860 - 33468976
Alignment:
Q  174 agtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatct 273  Q
    |||||||||||||| |||| |||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| | || ||||||||    
T  33468860 agtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacagatatatct 33468959  T
Q  274 ttcccgcagatcctaaa 290  Q
    |||| || || ||||||    
T  33468960 ttcctgcggaacctaaa 33468976  T

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Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 173 - 290
Target Start/End: Original strand, 31844529 - 31844646
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatc 272  Q
    ||||||||||||||| |||| ||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |  |||||||    
T  31844529 cagtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaatgttacttccttcctgcgaataatttcacatttcctacggatatatc 31844628  T
Q  273 tttcccgcagatcctaaa 290  Q
    ||||| || || ||||||    
T  31844629 tttcctgcggaacctaaa 31844646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 14727557 - 14727466
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    |||||||||||||||||||| |||||||||| ||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  14727557 cagtggcggagccagaaattttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgca 14727466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 173 - 263
Target Start/End: Complemental strand, 4774199 - 4774109
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgc 263  Q
    |||||||||||||||||||| ||||||| || ||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  4774199 cagtggcggagccagaaattttatagagtctgggcaaaaaaattatcgcaaaatgttactttcttcctgcgaataatttcacatttcttgc 4774109  T

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Target: chr1; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 25007691 - 25007600
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    ||||||||||||||| |||| |||||||||| |||||||||||||||| |||| |||||||||||||| |||||||||||||||||| ||||    
T  25007691 cagtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgca 25007600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 176 - 264
Target Start/End: Original strand, 37153881 - 37153969
Alignment:
Q  176 tggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    |||||||||||| |||| |||||||||| |||||||||||||||| |||| |||||||||||||| |||||||||||||||||| ||||    
T  37153881 tggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgca 37153969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 173 - 296
Target Start/End: Complemental strand, 34459348 - 34459225
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatc 272  Q
    ||||| ||||||||| |||| ||||||| || |||||||||||||||  |||| |||||||||||||  |||||||||||||||||| | || |||||||    
T  34459348 cagtgacggagccaggaattttatagagtctgggcaaaaaatttatcacaaaacgttacttccttcccacgaataatttcacatttcctacagatatatc 34459249  T
Q  273 tttcccgcagatcctaaaatccta 296  Q
    ||||  || |||||||||||||||    
T  34459248 tttcttgcggatcctaaaatccta 34459225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 44305639 - 44305548
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    ||||||||||||||| |||| |||||||||| ||||||||| |||||| |||| |||||||||||||| |||||||||||||||||| ||||    
T  44305639 cagtggcggagccaggaattttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctacgaataatttcacatttcctgca 44305548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 290
Target Start/End: Complemental strand, 8239499 - 8239382
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatc 272  Q
    ||||||||||||||| |||| |||||| ||| |||||||||||||||| |||| ||||||||||||||  ||||||||||||||||| | |  |||||||    
T  8239499 cagtggcggagccaggaattttatagaacctaggcaaaaaatttatcgcaaaacgttacttccttcctatgaataatttcacatttcctacggatatatc 8239400  T
Q  273 tttcccgcagatcctaaa 290  Q
    ||||| || || ||||||    
T  8239399 tttcctgcggaacctaaa 8239382  T

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Target: chr1; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 1428307 - 1428392
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacattt 258  Q
    |||| |||||||||| |||| |||||||||| ||||||||||||| || |||| |||||||||||||| |||||||||||||||||    
T  1428307 cagtagcggagccaggaattttatagagcctgggcaaaaaatttaccgcaaaacgttacttccttcctacgaataatttcacattt 1428392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 173 - 296
Target Start/End: Complemental strand, 9527284 - 9527161
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatc 272  Q
    ||||||| |||||||||||| |||||||  | |||||||||||||||| |||| ||||||  ||||||||||||||||||||||||| |    |||||||    
T  9527284 cagtggcagagccagaaattttatagagtatgggcaaaaaatttatcgcaaaacgttactgtcttcctgcgaataatttcacatttcctatggatatatc 9527185  T
Q  273 tttcccgcagatcctaaaatccta 296  Q
    ||||  |  |||||||||||||||    
T  9527184 tttctggaggatcctaaaatccta 9527161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 27460905 - 27460815
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    ||||||||||||||  |||| |||||||||| || ||||||||||||| ||||  |||||||||||||||||||||||||||||||| ||||    
T  27460905 cagtggcggagccaagaattttatagagcctggg-aaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttcctgca 27460815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 24646275 - 24646189
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    |||| |||||||||| |||| |||||||||| ||||||||| |||||  ||||||||||||||||| |||||||||||||| |||||    
T  24646275 cagttgcggagccaggaattttatagagcctgggcaaaaaaattatctcaaaatgttacttccttcatgcgaataatttcaaatttc 24646189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 173 - 290
Target Start/End: Complemental strand, 6331892 - 6331775
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatc 272  Q
    |||||||||| |||| |||| |||||||| |  ||||||||||||||| |||| |||||||||||||| | |||||||||||||||| | |  |||||||    
T  6331892 cagtggcggaaccaggaattttatagagcatgagcaaaaaatttatcgcaaaacgttacttccttccttcaaataatttcacatttcctacggatatatc 6331793  T
Q  273 tttcccgcagatcctaaa 290  Q
    ||||| || || ||||||    
T  6331792 tttcctgcggaacctaaa 6331775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 27583905 - 27583992
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    ||||||||||||||| |||| ||||||||||  ||||||||||||||| |||| ||||    ||||||||||||||||||||||||| ||||    
T  27583905 cagtggcggagccaggaattttatagagcctgagcaaaaaatttatcgcaaaacgtta----cttcctgcgaataatttcacatttcctgca 27583992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 25011426 - 25011503
Alignment:
Q  174 agtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataattt 251  Q
    |||||||| |||||||||| ||||||  || ||||||||| |||||| |||| |||||||||||| ||||||||||||    
T  25011426 agtggcggcgccagaaattttatagaatctgggcaaaaaaattatcgcaaaacgttacttccttcatgcgaataattt 25011503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 293
Target Start/End: Original strand, 6801972 - 6802092
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatc 272  Q
    ||||||| |||| ||||||| |||||||  | | |||||||||||||| |||| |||| ||||| | |||| |||||| |||||||| |||| ||||| |    
T  6801972 cagtggcagagcaagaaattttatagagtttggacaaaaaatttatcgcaaaacgttatttcctacatgcggataattgcacatttcctgcagatatacc 6802071  T
Q  273 tttcccgcagatcctaaaatc 293  Q
    ||||| |  ||||||||||||    
T  6802072 tttcctgaggatcctaaaatc 6802092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 259
Target Start/End: Complemental strand, 24745629 - 24745548
Alignment:
Q  176 tggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    |||||||||||| |||| ||||||| || ||||||||| |||||| ||  |||||||| |||| ||||||||||||||||||||    
T  24745629 tggcggagccaggaattttatagagtctgggcaaaaaaattatcgcaa--tgttactttcttcatgcgaataatttcacatttc 24745548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 259
Target Start/End: Original strand, 4641928 - 4642011
Alignment:
Q  176 tggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    |||| ||| ||| |||| |||||||||   |||||||||  |||| |||| |||||||||||||||||||||||||||||||||    
T  4641928 tggcagagtcaggaattttatagagcccgtgcaaaaaatcaatcgcaaaacgttacttccttcctgcgaataatttcacatttc 4642011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 296
Target Start/End: Original strand, 4642009 - 4642069
Alignment:
Q  236 ttcctgcgaataatttcacatttcttgcaaatatatctttcccgcagatcctaaaatccta 296  Q
    |||||||| ||||||||| ||||| |||  |||||||||||| || |||||||||||||||    
T  4642009 ttcctgcggataatttcatatttcctgcggatatatctttcctgcggatcctaaaatccta 4642069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 42817743 - 42817704
Alignment:
Q  224 aatgttacttccttcctgcgaataatttcacatttcttgc 263  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  42817743 aatgttacttccttcctgcaaataattgcacatttcttgc 42817704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 44238734 - 44238815
Alignment:
Q  174 agtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    ||||| |||| |||||||| ||||||| ||  | |||| |||||||||||||||||||||| |    ||||||| |||||||||||    
T  44238734 agtggtggagtcagaaattttatagagtctgtgtaaaatatttatcgtaaaatgttacttcat----gcgaatattttcacatttc 44238815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 44238813 - 44238865
Alignment:
Q  236 ttcctgcgaataatttcacatttcttgcaaatatatctttcccgcagatccta 288  Q
    |||||||| ||||||||||||||| |||  |||||||||||  ||||||||||    
T  44238813 ttcctgcggataatttcacatttcatgcggatatatctttcttgcagatccta 44238865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 9e-33; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 172 - 259
Target Start/End: Original strand, 11826935 - 11827022
Alignment:
Q  172 acagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    ||||||||| ||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11826935 acagtggcgaagccagaaattttatagagcctaggcaaaaaaattatcgtaaaatgttacttccttcctgcgaataatttcacatttc 11827022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 174 - 290
Target Start/End: Complemental strand, 10058743 - 10058627
Alignment:
Q  174 agtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatct 273  Q
    |||||||||||||| |||| |||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| | |  ||||||||    
T  10058743 agtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggatatatct 10058644  T
Q  274 ttcccgcagatcctaaa 290  Q
    |||| || || ||||||    
T  10058643 ttcctgcggaacctaaa 10058627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 176 - 259
Target Start/End: Complemental strand, 31364339 - 31364256
Alignment:
Q  176 tggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    ||||||||||||||||| |||||||| | |||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  31364339 tggcggagccagaaattttatagagcatgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 31364256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 4728788 - 4728701
Alignment:
Q  171 gacagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacattt 258  Q
    |||||||||||||| || |||| |||||||||| |||||||||||||||| |||| |||||||||||||||| |||||||||||||||    
T  4728788 gacagtggcggagctaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcaaataatttcacattt 4728701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 2017325 - 2017411
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    ||||||||||||||| |||| |||| ||||| |||||||||||||||| |||| |||||||||||||| ||||||||||||||||||    
T  2017325 cagtggcggagccaggaattttataaagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttc 2017411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 9003783 - 9003697
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    ||||||||||| |||||||| |||||||||| | ||||||| |||||| ||||||||||||||||| ||||||||||||||||||||    
T  9003783 cagtggcggagtcagaaattttatagagcctggacaaaaaaattatcgcaaaatgttacttccttcttgcgaataatttcacatttc 9003697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 10715883 - 10715793
Alignment:
Q  174 agtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    ||||||||||||||  ||| |||||||||| |||||||||||||||| ||||  |||||||||||||||||||||||||||||||| ||||    
T  10715883 agtggcggagccaggtattttatagagcctgggcaaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttcctgca 10715793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 10929653 - 10929563
Alignment:
Q  174 agtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    ||||||||||||||  ||| |||||||||| |||||||||||||||| ||||  |||||||||||||||||||||||||||||||| ||||    
T  10929653 agtggcggagccaggtattttatagagcctgggcaaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttcctgca 10929563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 46645831 - 46645745
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    ||||||||||||||| |||| ||||||| || || ||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  46645831 cagtggcggagccaggaattttatagagtctgggaaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 46645745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 52373982 - 52373896
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    ||||||||||||||| |||| ||||||| ||  ||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  52373982 cagtggcggagccaggaattttatagagtctgtgcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 52373896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 179 - 259
Target Start/End: Original strand, 2521792 - 2521872
Alignment:
Q  179 cggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    ||||||||| |||| |||||| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2521792 cggagccaggaattttatagaacatgggcaaaaaatttatcgtaaaacgttacttccttcctgcgaataatttcacatttc 2521872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 32006112 - 32006016
Alignment:
Q  172 acagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaata 268  Q
    |||||||||||| ||  |||| ||||||| || |||||||||||||||| |||| |||||||||||||| |||||||||||||||||| ||||||||    
T  32006112 acagtggcggagtcatgaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcaaata 32006016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 4552413 - 4552322
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    ||||||||||||||| |||| ||||||| || |||||||||||||||| |||| |||||||||||||| | |||||||||||||||| ||||    
T  4552413 cagtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctacaaataatttcacatttcctgca 4552322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 14044552 - 14044466
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    |||||||||||||||||||| |||||||  | ||||||||| |||||| |||||||||| ||||||||| |||||||||||||||||    
T  14044552 cagtggcggagccagaaattttatagagtatgggcaaaaaaattatcgcaaaatgttacctccttcctgagaataatttcacatttc 14044466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 293
Target Start/End: Complemental strand, 25237816 - 25237696
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatc 272  Q
    |||||||||||| || ||||||||||||| | ||||||   ||||||  |||| ||||||||||||||||||||||||||||||||| |||  ||| |||    
T  25237816 cagtggcggagctaggaattatatagagcatgggcaaattttttatcacaaaacgttacttccttcctgcgaataatttcacatttcctgcggatacatc 25237717  T
Q  273 tttcccgcagatcctaaaatc 293  Q
    ||||| ||  |||||||||||    
T  25237716 tttcctgcgaatcctaaaatc 25237696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 172 - 258
Target Start/End: Complemental strand, 40969453 - 40969367
Alignment:
Q  172 acagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacattt 258  Q
    |||||| ||||||||| |||| |||||||| | |||||||||||||||| |||| ||||||||||| ||||||||||||||| ||||    
T  40969453 acagtgacggagccagcaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttcctttctgcgaataatttcatattt 40969367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 176 - 264
Target Start/End: Original strand, 43003075 - 43003163
Alignment:
Q  176 tggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    ||||||||||||||||| ||||||| || | |||||||||||| | | || |||||||| |||||||||||||||||||||||| ||||    
T  43003075 tggcggagccagaaattttatagagtctggacaaaaaatttattgcagaacgttacttctttcctgcgaataatttcacatttcctgca 43003163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 259
Target Start/End: Complemental strand, 32828368 - 32828285
Alignment:
Q  176 tggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    ||||||||||||||||| ||||| |||| ||||||||| |||||  ||||| ||||||||||||||| |||||||| |||||||    
T  32828368 tggcggagccagaaattttatagggcctgggcaaaaaaattatcacaaaatattacttccttcctgcaaataattttacatttc 32828285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 9694291 - 9694208
Alignment:
Q  174 agtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    ||||||||||||||||||| | |||||||| ||||||||||| |||| ||||||||| ||||||| |||||||||||| |||||||    
T  9694291 agtggcggagccagaaatttt-tagagcctgggcaaaaaatt-atcgcaaaatgttatttccttcttgcgaataatttgacatttc 9694208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 41972330 - 41972415
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacattt 258  Q
    |||| |||||||||| |||| |||| |  || | |||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  41972330 cagtagcggagccaggaattttataaaatctggtcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 41972415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 49745264 - 49745199
Alignment:
Q  193 atatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacattt 258  Q
    |||||||| || || |||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  49745264 atatagagtctggggaaaaaatttatcgtaaaatgttacgtccttcctgcgaataattttacattt 49745199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 50100063 - 50100012
Alignment:
Q  208 aaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    ||||||||||||| |||| |||||||||||||| ||||||||||||||||||    
T  50100063 aaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttc 50100012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 258
Target Start/End: Complemental strand, 2576400 - 2576315
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacattt 258  Q
    ||||||||||||||  |||| |||| || || ||||||||| |||||| |||| ||||||||||| |||||| |||||||| ||||    
T  2576400 cagtggcggagccaagaattttataaagtctgggcaaaaaaattatcgcaaaacgttacttcctttctgcgattaatttcatattt 2576315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 37236116 - 37236164
Alignment:
Q  172 acagtggcggagccagaaattatatagagcctcggcaaaaaatttatcg 220  Q
    |||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  37236116 acagtggcggagccagaaattacatagagcctgggcgaaaaatttatcg 37236164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 6255484 - 6255433
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaa 224  Q
    ||||||||||||||||||||||||||||  | ||| ||||||||||||||||    
T  6255484 cagtggcggagccagaaattatatagagtttgggcgaaaaatttatcgtaaa 6255433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 15034358 - 15034397
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaa 212  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  15034358 cagtggcggagccagaaattatatagagcctgggcaaaaa 15034397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 50384101 - 50384024
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataattt 251  Q
    ||||||||||||||  |||| |||||||||| |||||||||   || | |||| |||||||||||||||||||||||||    
T  50384101 cagtggcggagccaagaattttatagagcctgggcaaaaaaaa-attgcaaaacgttacttccttcctgcgaataattt 50384024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 17555512 - 17555465
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcg 220  Q
    ||||||||||||||||||||| |||||||||  || ||||||||||||    
T  17555512 cagtggcggagccagaaattacatagagcctgagcgaaaaatttatcg 17555465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 296
Target Start/End: Complemental strand, 8901976 - 8901919
Alignment:
Q  239 ctgcgaataatttcacatttcttgcaaatatatctttcccgcagatcctaaaatccta 296  Q
    ||||||||||||||||||||  |||  || |||||||||||  |||||||||||||||    
T  8901976 ctgcgaataatttcacatttactgcggatgtatctttcccgtggatcctaaaatccta 8901919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 42844026 - 42843981
Alignment:
Q  175 gtggcggagccagaaattatatagagcctcggcaaaaaatttatcg 220  Q
    ||||||||||||| |||| |||||||||| ||| ||||||||||||    
T  42844026 gtggcggagccaggaattctatagagcctgggcgaaaaatttatcg 42843981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 174 - 264
Target Start/End: Original strand, 36406378 - 36406468
Alignment:
Q  174 agtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    |||||||||||||| |||| |||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  36406378 agtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcttgca 36406468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 173 - 290
Target Start/End: Complemental strand, 24965239 - 24965122
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatc 272  Q
    ||||||| ||||||| |||| |||||||||| |||||||||||||||| ||||  |||||| ||| ||||||||||||||||||||| ||||||||||||    
T  24965239 cagtggcagagccaggaattttatagagcctgggcaaaaaatttatcgcaaaaccttactttctttctgcgaataatttcacatttcctgcaaatatatc 24965140  T
Q  273 tttcccgcagatcctaaa 290  Q
    ||||| || || ||||||    
T  24965139 tttcctgcggaacctaaa 24965122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 176 - 258
Target Start/End: Original strand, 27321753 - 27321835
Alignment:
Q  176 tggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacattt 258  Q
    |||| |||||||||||| |||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  27321753 tggcagagccagaaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacattt 27321835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 38214953 - 38214867
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    |||||||||||||||||||| |||||||| | ||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||    
T  38214953 cagtggcggagccagaaattttatagagcttgggcaaaaaaattatcgcaaaatgttacttcattcctgcgaataatttcacatttc 38214867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 173 - 268
Target Start/End: Original strand, 34282748 - 34282843
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaata 268  Q
    |||||||| | ||||||||| |||||||||| | |||||||||||||| | || ||||||||||||||||||||||||||||||||| ||||||||    
T  34282748 cagtggcgtacccagaaattttatagagcctggacaaaaaatttatcgcacaacgttacttccttcctgcgaataatttcacatttcctgcaaata 34282843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 172 - 258
Target Start/End: Complemental strand, 28928288 - 28928202
Alignment:
Q  172 acagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacattt 258  Q
    |||||||||||||||| |||| || |||| || || |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28928288 acagtggcggagccaggaattttaaagagtctgggtaaaaaatttatcgtaaaaagttacttccttcctgcgaataatttcacattt 28928202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 176 - 259
Target Start/End: Original strand, 35384256 - 35384339
Alignment:
Q  176 tggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    |||||||||||| |||| |||||||| | |||||||||||||||| |||| | |||||||||||| ||||||||||||||||||    
T  35384256 tggcggagccaggaattttatagagcttgggcaaaaaatttatcgcaaaacggtacttccttcctacgaataatttcacatttc 35384339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 3383907 - 3383998
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    |||||||||||||||||||| |||||| | |  ||||||| ||||||| |||| |||||||||||||| ||||||||||||| |||| ||||    
T  3383907 cagtggcggagccagaaattttatagaacatgagcaaaaattttatcgcaaaacgttacttccttcctacgaataatttcacgtttcctgca 3383998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 13243342 - 13243273
Alignment:
Q  189 aattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacattt 258  Q
    |||| ||||||||||  |||||||||||||||||||| |||||||  ||| ||| |||||||||||||||    
T  13243342 aattttatagagcctgagcaaaaaatttatcgtaaaacgttacttttttcttgccaataatttcacattt 13243273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 296
Target Start/End: Original strand, 31500736 - 31500824
Alignment:
Q  208 aaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatctttcccgcagatcctaaaatccta 296  Q
    ||||||||||| | ||||| ||||||||||| | |||||||||| ||||||| | |  ||||||||||||  | |||||||||||||||    
T  31500736 aaaaaatttattgcaaaatattacttccttcatacgaataattttacatttcctacgtatatatctttccaacggatcctaaaatccta 31500824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 10014312 - 10014356
Alignment:
Q  176 tggcggagccagaaattatatagagcctcggcaaaaaatttatcg 220  Q
    ||||| |||||||||||||||||||||| ||| ||||||||||||    
T  10014312 tggcgaagccagaaattatatagagcctgggcgaaaaatttatcg 10014356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 17839645 - 17839598
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcg 220  Q
    ||||||||||||||| ||||| ||||||||| ||| ||||||||||||    
T  17839645 cagtggcggagccaggaattacatagagcctgggcgaaaaatttatcg 17839598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 37516854 - 37516750
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatc 272  Q
    ||||||||||||||| |||| |||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| | |  |||||||    
T  37516854 cagtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggatatatc 37516755  T
Q  273 tttcc 277  Q
    |||||    
T  37516754 tttcc 37516750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 174 - 290
Target Start/End: Original strand, 26370931 - 26371047
Alignment:
Q  174 agtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatct 273  Q
    |||||||||||||| |||| ||||||| || |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| | |  ||||||||    
T  26370931 agtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggatatatct 26371030  T
Q  274 ttcccgcagatcctaaa 290  Q
    |||| || || ||||||    
T  26371031 ttcctgcggaacctaaa 26371047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 41218243 - 41218334
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    ||||||||||| ||| |||| ||||||| || |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  41218243 cagtggcggagtcaggaattttatagagtctaggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgca 41218334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 7501186 - 7501098
Alignment:
Q  176 tggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    |||||||||||| |||| ||||||||||||  ||||||||||||| |||| ||||||| ||||||||||||||||||||||||| ||||    
T  7501186 tggcggagccaggaattttatagagcctcgataaaaaatttatcgcaaaacgttacttacttcctgcgaataatttcacatttcctgca 7501098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 28311510 - 28311419
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    ||||||||||||||| |||| ||||||| || |||||||||||||||| ||||  ||||||||||||| |||||||||||||||||| ||||    
T  28311510 cagtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacattacttccttcctacgaataatttcacatttcctgca 28311419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 53988065 - 53987978
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaa-tttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    |||||||||||||||||||| ||||||| |  ||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||    
T  53988065 cagtggcggagccagaaattttatagagtccgggcaaaaaaatttattgcaaaatgttacttccttcctgcgaataatttcacatttc 53987978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 14461297 - 14461207
Alignment:
Q  174 agtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    |||||||||||||| |||| |||||||||| |||||||||||||||  |||| |||||||||||||| |||||||||| ||||||| ||||    
T  14461297 agtggcggagccaggaattttatagagcctgggcaaaaaatttatcacaaaacgttacttccttcctacgaataattttacatttcctgca 14461207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 12910059 - 12909975
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    ||||||||||||||| |||| |||||||||| |||||||||||||||| |||  |||||||||||||  ||||||||||||||||||    
T  12910059 cagtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaatcgttacttccttcc--cgaataatttcacatttc 12909975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 172 - 259
Target Start/End: Complemental strand, 26278564 - 26278477
Alignment:
Q  172 acagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    ||||||||||||| ||||||| |||||||  | ||||||||| |||||| |||||| |||||||||| ||||||||||||||||||||    
T  26278564 acagtggcggagcaagaaattttatagagtttaggcaaaaaaattatcgcaaaatgatacttccttcttgcgaataatttcacatttc 26278477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 176 - 258
Target Start/End: Original strand, 33178983 - 33179065
Alignment:
Q  176 tggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacattt 258  Q
    |||||||| ||| |||| ||||||| || |||||||||||||||| |||| |||||||| |||||||||||||||||||||||    
T  33178983 tggcggagtcaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttcattcctgcgaataatttcacattt 33179065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 173 - 290
Target Start/End: Original strand, 25391733 - 25391850
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatc 272  Q
    ||||||| ||||||| |||| |||||||| | |||||||||||||||| ||||  ||||||||||| | |||||||||||||||||| | |  |||||||    
T  25391733 cagtggcagagccaggaattttatagagcttgggcaaaaaatttatcgcaaaacattacttccttcttacgaataatttcacatttcctacggatatatc 25391832  T
Q  273 tttcccgcagatcctaaa 290  Q
    ||||| || || ||||||    
T  25391833 tttcctgcggaacctaaa 25391850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 43700081 - 43700172
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    ||||||||||| |||||||| |||||||| | || ||||||| ||||| |||| |||||||| || ||||||||||||||||||||| ||||    
T  43700081 cagtggcggagtcagaaattttatagagcttgggtaaaaaatatatcgcaaaacgttacttcttttctgcgaataatttcacatttcctgca 43700172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 53652128 - 53652040
Alignment:
Q  176 tggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    |||||||||||| |||| ||||||| || | |||||||||||||| ||||  |||| | |||||| |||||||||||||||||| ||||    
T  53652128 tggcggagccaggaattttatagagtctggacaaaaaatttatcgcaaaacattacgttcttcctacgaataatttcacatttcctgca 53652040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 44047816 - 44047726
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    ||||||||||||||| |||| | ||||| || | |||||||||||||| |||| |||||||| ||||| | |||||||||||||||| ||||    
T  44047816 cagtggcggagccaggaatttt-tagagtctggacaaaaaatttatcgcaaaacgttacttctttcctacaaataatttcacatttcctgca 44047726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 9600506 - 9600464
Alignment:
Q  217 atcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    |||||||||||||||||||||||| |||||||||||| |||||    
T  9600506 atcgtaaaatgttacttccttcctacgaataatttcatatttc 9600464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 6891563 - 6891515
Alignment:
Q  172 acagtggcggagccagaaattatatagagcctcggcaaaaaatttatcg 220  Q
    |||||||||||||||| ||||| ||||||||| ||| ||||||||||||    
T  6891563 acagtggcggagccaggaattacatagagcctgggcgaaaaatttatcg 6891515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 19269162 - 19269209
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcg 220  Q
    ||||||||||||||| ||||| ||||||||| ||| ||||||||||||    
T  19269162 cagtggcggagccaggaattacatagagcctgggcgaaaaatttatcg 19269209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 31989345 - 31989298
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcg 220  Q
    |||||||| |||||||||||  ||||||||| ||||||||||||||||    
T  31989345 cagtggcgaagccagaaatttcatagagcctgggcaaaaaatttatcg 31989298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 35077700 - 35077641
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttact 232  Q
    |||||||||||  ||||||| |||||||||| ||||||||| | |||| |||||||||||    
T  35077700 cagtggcggagttagaaattttatagagcctgggcaaaaaaataatcgcaaaatgttact 35077641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 48757334 - 48757381
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcg 220  Q
    ||||||||||||||| ||||| ||||||||| ||| ||||||||||||    
T  48757334 cagtggcggagccaggaattacatagagcctgggcgaaaaatttatcg 48757381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 41358541 - 41358593
Alignment:
Q  207 caaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    ||||||| |||||| |||| |||| |||||||||||| |||||| ||||||||    
T  41358541 caaaaaaattatcgcaaaacgttatttccttcctgcggataattgcacatttc 41358593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 4305 - 4219
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    |||||||||||||| ||||| |||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  4305 cagtggcggagccataaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacatttc 4219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 2476034 - 2475930
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatc 272  Q
    ||||||| ||| ||| |||| |||||||||| ||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| ||| ||||||||    
T  2476034 cagtggcagagtcaggaattttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcgaatatatc 2475935  T
Q  273 tttcc 277  Q
    |||||    
T  2475934 tttcc 2475930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 173 - 258
Target Start/End: Complemental strand, 12000785 - 12000700
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacattt 258  Q
    ||||||||||||||| ||||||||||||||| ||||||||| |||||| |||||||||| ||||||||||||||||||| ||||||    
T  12000785 cagtggcggagccaggaattatatagagcctaggcaaaaaaattatcgcaaaatgttacgtccttcctgcgaataattttacattt 12000700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 29257594 - 29257503
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    ||||||||||||||| |||| ||||||| || |||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| ||||    
T  29257594 cagtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttcctttctgcgaataatttcacatttcctgca 29257503  T

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Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 258
Target Start/End: Complemental strand, 13203995 - 13203910
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacattt 258  Q
    ||||||||||||||| |||| |||||||| |  ||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  13203995 cagtggcggagccaggaattttatagagcatgagcaaaaaatttatcgcaaaatgttacttccttccagcgaataatttcacattt 13203910  T

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Target: chr2; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 173 - 298
Target Start/End: Complemental strand, 17149024 - 17148895
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatc 272  Q
    |||||||||||| ||||||| ||| |||| | |||||||||||||||  |||| ||||||||||||||||||||||||||||||||| |||| |||  ||    
T  17149024 cagtggcggagctagaaattttattgagcttgggcaaaaaatttatctcaaaacgttacttccttcctgcgaataatttcacatttcctgcagataattc 17148925  T
Q  273 ----tttcccgcagatcctaaaatcctatg 298  Q
        ||||| || |||||||||||||||||    
T  17148924 cacatttcctgcggatcctaaaatcctatg 17148895  T

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Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 296
Target Start/End: Complemental strand, 17249558 - 17249435
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatc 272  Q
    ||||||||||| ||| |||| ||||||| || ||||||| |||||| | |||| ||||||| ||||||||||||||||||||||||| |||  |||||||    
T  17249558 cagtggcggagtcaggaattttatagagtctgggcaaaatatttatagcaaaacgttactttcttcctgcgaataatttcacatttcctgcggatatatc 17249459  T
Q  273 tttcccgcagatcctaaaatccta 296  Q
    |||   || |||||||||||||||    
T  17249458 tttaatgcggatcctaaaatccta 17249435  T

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Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 276
Target Start/End: Original strand, 22572609 - 22572712
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatc 272  Q
    ||||||||||||||| |||| |||| ||||| | |||||||||||||| |||| ||||||| ||||||||||||||||||||||||| |   ||||||||    
T  22572609 cagtggcggagccaggaattttataaagcctggacaaaaaatttatcgcaaaacgttactttcttcctgcgaataatttcacatttcctatgaatatatc 22572708  T
Q  273 tttc 276  Q
    ||||    
T  22572709 tttc 22572712  T

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Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 41114757 - 41114848
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    |||||| |||||||| |||| |||||||| | |||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||    
T  41114757 cagtggaggagccaggaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcatgcgaataatttcacatttcctgca 41114848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 172 - 298
Target Start/End: Original strand, 45444339 - 45444466
Alignment:
Q  172 acagtggcggagccagaaattatatagagcctcggcaaaa-aatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatata 270  Q
    |||||||| ||| ||||||||  |||||| || | ||||| ||||||| | ||||  |||||||||||||||||||||||||||||||| || | |||||    
T  45444339 acagtggcagagtcagaaatttcatagagtctggacaaaaaaatttattgcaaaacattacttccttcctgcgaataatttcacatttcctgtagatata 45444438  T
Q  271 tctttcccgcagatcctaaaatcctatg 298  Q
    ||||||  ||||||||||||||||||||    
T  45444439 tctttcttgcagatcctaaaatcctatg 45444466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 173 - 258
Target Start/End: Complemental strand, 15651468 - 15651384
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacattt 258  Q
    ||||||| ||||||  |||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||| ||||||    
T  15651468 cagtggcagagccaagaattatatagagcctcggcaaaaa-tttatcgcaaaatgttacgtccttcctgcgaataattttacattt 15651384  T

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Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 176 - 296
Target Start/End: Original strand, 16220919 - 16221039
Alignment:
Q  176 tggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatatcttt 275  Q
    ||||||||||||||||| |||||||||| ||||||||| |||||| |||| |||| |||||| ||||  |||||| |||||||  ||   ||||| ||||    
T  16220919 tggcggagccagaaattttatagagcctgggcaaaaaaattatcgcaaaacgttatttcctttctgcatataattgcacattttctgtggatataccttt 16221018  T
Q  276 cccgcagatcctaaaatccta 296  Q
    || ||||||||||||||||||    
T  16221019 cctgcagatcctaaaatccta 16221039  T

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Target: chr2; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 205 - 264
Target Start/End: Original strand, 18299062 - 18299121
Alignment:
Q  205 ggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  18299062 ggcaaaaaatttatcgtaaaacgttacttccttcctgcgaataatttcacatttcctgca 18299121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 303979 - 304070
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    |||||||||||||||||||| |||||||  | ||||||||| |||||| |||| |||||||| |  ||||||||||||||||||||| ||||    
T  303979 cagtggcggagccagaaattttatagagtttgggcaaaaaaattatcgcaaaacgttacttcttatctgcgaataatttcacatttcctgca 304070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 41010740 - 41010649
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    ||||| |||||| || |||| |||||||  | | |||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  41010740 cagtgacggagctaggaattttatagagtgtggacaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgca 41010649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 33909234 - 33909320
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    ||||||||| | |||||||| ||||||| || |||||||| ||||||| |||||||||| |||||| ||| ||||||||||||||||    
T  33909234 cagtggcggggtcagaaattttatagagtctgggcaaaaactttatcgcaaaatgttacatccttcatgcaaataatttcacatttc 33909320  T

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Target: chr2; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 6799773 - 6799864
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    |||||||||||| || |||| |||||||||| ||||||   ||||||  |||| |||| |||||||||||||||||||||||||||| ||||    
T  6799773 cagtggcggagctaggaattttatagagcctgggcaaattttttatcacaaaacgttagttccttcctgcgaataatttcacatttcctgca 6799864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 26655688 - 26655737
Alignment:
Q  175 gtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaa 224  Q
    |||||||||||| ||||| |||||||||| ||||||||||||||||||||    
T  26655688 gtggcggagccaaaaattttatagagcctgggcaaaaaatttatcgtaaa 26655737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 224 - 296
Target Start/End: Complemental strand, 34756900 - 34756828
Alignment:
Q  224 aatgttacttccttcctgcgaataatttcacatttcttgcaaatatatctttcccgcagatcctaaaatccta 296  Q
    |||||||||||||||||||| ||||||  ||||||| |||  ||||| |||||| || |||||||||||||||    
T  34756900 aatgttacttccttcctgcggataattgtacatttcctgcggatatacctttcctgcggatcctaaaatccta 34756828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 42755571 - 42755617
Alignment:
Q  174 agtggcggagccagaaattatatagagcctcggcaaaaaatttatcg 220  Q
    |||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  42755571 agtggcggagccaggaattatatagagcctgggcgaaaaatttatcg 42755617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 298
Target Start/End: Original strand, 304063 - 304125
Alignment:
Q  236 ttcctgcgaataatttcacatttcttgcaaatatatctttcccgcagatcctaaaatcctatg 298  Q
    |||||||  ||||||||||||||| |||  |||||||||||| || |||||||||||| ||||    
T  304063 ttcctgcagataatttcacatttcctgcggatatatctttcctgcggatcctaaaatcttatg 304125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 296
Target Start/End: Complemental strand, 15651384 - 15651324
Alignment:
Q  236 ttcctgcgaataatttcacatttcttgcaaatatatctttcccgcagatcctaaaatccta 296  Q
    |||||||| ||||||||||||||| ||   ||||||||||||  | |||||||||||||||    
T  15651384 ttcctgcggataatttcacatttcctggggatatatctttcctactgatcctaaaatccta 15651324  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 9696276 - 9696192
Alignment:
Q  180 ggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    ||||||||||||| ||||||| || |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  9696276 ggagccagaaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgca 9696192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 2941450 - 2941359
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    |||||| |||||||| |||| |||||||||| |||||||||||||||| |||| |||||||||||||| |||||||||||||||||| ||||    
T  2941450 cagtggtggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgca 2941359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 339566 - 339480
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    |||||||||||| ||||||| |||||||| | |||||||||||||||| ||||||||||||||||||||| | ||||||||||||||    
T  339566 cagtggcggagctagaaattttatagagcttgggcaaaaaatttatcgcaaaatgttacttccttcctgcaattaatttcacatttc 339480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 10397698 - 10397783
Alignment:
Q  174 agtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    ||||||||| |||| |||| ||||||| || |||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  10397698 agtggcggaaccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 10397783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 28614292 - 28614377
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacattt 258  Q
    |||||| |||| |||||||| ||||||||||  |||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  28614292 cagtggtggaggcagaaattttatagagcctgtgcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacattt 28614377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 2960899 - 2960814
Alignment:
Q  174 agtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    ||||||||||||||||||| ||||||||||  || ||||| |||| | ||||||||||||||||| ||||||||||||||||||||    
T  2960899 agtggcggagccagaaattttatagagcctgagcgaaaaaattattgcaaaatgttacttccttcttgcgaataatttcacatttc 2960814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 1780933 - 1781017
Alignment:
Q  175 gtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    ||||| ||||||| |||| ||||||| || |||| ||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  1780933 gtggcagagccaggaattttatagagtctgggcataaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 1781017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 14938810 - 14938901
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    ||||| ||||| |||||||| |||||||| | ||||||||| |||||| |||||||||||| ||||||| ||||||||||||||||| ||||    
T  14938810 cagtgacggagtcagaaattttatagagcttgggcaaaaaaattatcgcaaaatgttactttcttcctgggaataatttcacatttcctgca 14938901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 189 - 264
Target Start/End: Original strand, 34248917 - 34248992
Alignment:
Q  189 aattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    |||| |||||||||| |||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| ||||    
T  34248917 aattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcggataatttcacatttcctgca 34248992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 264
Target Start/End: Original strand, 23663648 - 23663738
Alignment:
Q  174 agtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    ||||||| |||||| |||| |||||||||| |  ||||||||||||| |||| |||||||| |||||||||||||||||||||||| ||||    
T  23663648 agtggcgcagccaggaattttatagagcctggataaaaaatttatcgcaaaacgttacttcattcctgcgaataatttcacatttcctgca 23663738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 264
Target Start/End: Complemental strand, 15529172 - 15529083
Alignment:
Q  175 gtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    ||||||||| ||| |||| |||||||||| |||||||||||||||| ||||  ||||||| ||||| |||||||||||||||||| ||||    
T  15529172 gtggcggagtcaggaattttatagagcctaggcaaaaaatttatcgcaaaacattacttctttcctacgaataatttcacatttcctgca 15529083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 31188200 - 31188285
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacattt 258  Q
    ||||| ||||||||  |||| |||||||||| ||||||||| |||||| |||| ||||||||||||||| ||||||||||||||||    
T  31188200 cagtgacggagccatgaattttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctgtgaataatttcacattt 31188285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 9046807 - 9046894
Alignment:
Q  177 ggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    |||||||||||||||| |||||||  | |||||||||||||||| |||| |||| |||||||||  ||||||||||||||||| ||||    
T  9046807 ggcggagccagaaattttatagagtttgggcaaaaaatttatcggaaaacgttatttccttcctttgaataatttcacatttcctgca 9046894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 172 - 258
Target Start/End: Complemental strand, 15122272 - 15122186
Alignment:
Q  172 acagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacattt 258  Q
    |||||||||||| ||| |||| |||||||  | |||||||||||||||| |||| ||||||| ||| ||||||||||||||||||||    
T  15122272 acagtggcggagtcaggaattttatagagtttgggcaaaaaatttatcgcaaaacgttactttctttctgcgaataatttcacattt 15122186  T

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Target: chr6; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 258
Target Start/End: Original strand, 31200045 - 31200130
Alignment:
Q  174 agtggcggagccagaaattatatagagcctcggcaaaaaatttatcg-taaaatgttacttccttcctgcgaataatttcacattt 258  Q
    |||| ||||||||  |||| |||||||| | ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||    
T  31200045 agtgacggagccatgaattttatagagcatgggcaaaaaaattatcgctaaaacgttacttccttcctgcgaataatttcacattt 31200130  T

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Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 264
Target Start/End: Original strand, 2836066 - 2836146
Alignment:
Q  184 ccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    |||| |||| ||||||| ||  |||||||||||||   || | ||||||||||||||||||||||||||||||||| ||||    
T  2836066 ccaggaattttatagagtctgagcaaaaaatttattacaagacgttacttccttcctgcgaataatttcacatttcctgca 2836146  T

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Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 259
Target Start/End: Complemental strand, 34189023 - 34188940
Alignment:
Q  176 tggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    |||||||||||| |||| | ||||||||  ||||||||||| ||| |||| ||||| ||  || ||||||||||||||||||||    
T  34189023 tggcggagccaggaattttctagagcctgagcaaaaaatttgtcgcaaaacgttacctctctcttgcgaataatttcacatttc 34188940  T

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Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 26218297 - 26218342
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttat 218  Q
    |||||||||||||||||||||||||||||||  || ||||||||||    
T  26218297 cagtggcggagccagaaattatatagagcctgagcgaaaaatttat 26218342  T

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Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 34385004 - 34385051
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcg 220  Q
    |||||||||||||||||||||  |||||||| ||| ||||||||||||    
T  34385004 cagtggcggagccagaaattacgtagagcctgggcgaaaaatttatcg 34385051  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 21148895 - 21148943
Alignment:
Q  172 acagtggcggagccagaaattatatagagcctcggcaaaaaatttatcg 220  Q
    |||||||| ||||||| ||||| ||||||||| ||| ||||||||||||    
T  21148895 acagtggcagagccaggaattacatagagcctgggcgaaaaatttatcg 21148943  T

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Target: scaffold0618 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 1923 - 1832
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    ||||||||||||||| |||| ||||||| || |||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| ||||    
T  1923 cagtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttcctttctgcgaataatttcacatttcctgca 1832  T

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Target: scaffold0075 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 11751 - 11660
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgca 264  Q
    ||||||||||||||| |||| |||||| ||| |||||||||||||||| |||| |||||||||||||| |||||||||||||||||| ||||    
T  11751 cagtggcggagccaggaattttatagaacctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgca 11660  T

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Target: scaffold0075; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 259
Target Start/End: Complemental strand, 7132 - 7052
Alignment:
Q  178 gcggagccagaaattatatagagcctcggcaaaaaatttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    ||||||| || |||| |||||| ||| |||||||||||||||| |||  |||||||||||||| |||||||||| |||||||    
T  7132 gcggagctaggaattttatagaacctgggcaaaaaatttatcgcaaac-gttacttccttcctacgaataattttacatttc 7052  T

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Target: scaffold0021 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 173 - 298
Target Start/End: Original strand, 112092 - 112218
Alignment:
Q  173 cagtggcggagccagaaattatatagagcctcggcaaaaa-atttatcgtaaaatgttacttccttcctgcgaataatttcacatttcttgcaaatatat 271  Q
    |||||| |||| ||||||||  || |||||| |||||||| |||||| | ||||  ||||||||||||||| ||||||||||| |||| ||   ||||||    
T  112092 cagtggtggagtcagaaatttcattgagcctgggcaaaaatatttattgcaaaacattacttccttcctgcaaataatttcacgtttcatgtggatatat 112191  T
Q  272 ctttcccgcagatcctaaaatcctatg 298  Q
    |||||| || |||||||||||||||||    
T  112192 ctttcctgcggatcctaaaatcctatg 112218  T

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Target: scaffold0021; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 109192 - 109278
Alignment:
Q  174 agtggcggagccagaaattatatagagcctcggcaaaaa-atttatcgtaaaatgttacttccttcctgcgaataatttcacatttc 259  Q
    ||||| ||||| |||||||  ||||||||| | |||||| |||||| | ||||  ||||||||||||||||||||||||||| ||||    
T  109192 agtggtggagctagaaatttcatagagcctggacaaaaatatttattgcaaaacattacttccttcctgcgaataatttcacgtttc 109278  T

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