View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_low_41 (Length: 300)
Name: NF15456_low_41
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 12 - 283
Target Start/End: Original strand, 33161498 - 33161769
Alignment:
| Q |
12 |
cataggcataagttgcgacgatgctaaggatcaaggcccataaaacgtttccgttggatttatccaccacggtcaagctaaggcccaatagcgtaagtcc |
111 |
Q |
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| T |
33161498 |
cataggcataagttgcgacgatgctaaggatcaaggcccataaaacgtttccgttggatttatccaccacggtcaagctaaggcccaatagcgtaagtcc |
33161597 |
T |
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| Q |
112 |
aataatcattcctccggtgctaatttgcaaaagtcgtcttctaccaagtttgtcaagtaaaaacaaagcaattacaaggaaaacaatttttgttaaacct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33161598 |
aataatcattcctccggtgctaatttgcaaaagtcgtcttctaccaagtttgtcaagtaaaaacaaagcaattacaaggaaaacaatttttgttaaacct |
33161697 |
T |
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| Q |
212 |
actccaatagttgcaagtaaaagcttttctttacttgtaataccagcttttctgaaaattctcggactatat |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33161698 |
actccaatagttgcaagtaaaagcttttctttacttgtaataccagcttttctgaaaattctcggactatat |
33161769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 104 - 262
Target Start/End: Original strand, 31988421 - 31988579
Alignment:
| Q |
104 |
gtaagtccaataatcattcctccggtgctaatttgcaaaagtcgtcttctaccaagtttgtcaagtaaaaacaaagcaattacaaggaaaacaatttttg |
203 |
Q |
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||||||||||||||||||||| | ||||||| ||| || | | ||||||||||| ||| |||| ||||| ||||||| |||||| |||| ||| |||| |
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| T |
31988421 |
gtaagtccaataatcattcctgcagtgctaacttgtaataaccttcttctaccaactttatcaatcaaaaataaagcaagtacaagaaaaataatctttg |
31988520 |
T |
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| Q |
204 |
ttaaacctactccaatagttgcaagtaaaagcttttctttacttgtaataccagctttt |
262 |
Q |
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|||| || || ||||| |||||||| ||||| |||||||||||| |||||||||||||| |
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| T |
31988521 |
ttaatccaacaccaattgttgcaagcaaaagattttctttacttttaataccagctttt |
31988579 |
T |
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