View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_low_42 (Length: 291)
Name: NF15456_low_42
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 72 - 274
Target Start/End: Original strand, 20169518 - 20169720
Alignment:
| Q |
72 |
tatcatatagacaaaatattttagggtttgcttggaatagtggtattgctatttannnnnnnccaataactaaatcaacttattaaaatacatcctgcaa |
171 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||| |
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| T |
20169518 |
tatcatatagccaaaatattttagggtttgcttggaatagtggtattgctattt-tttttttccgataactacatcaacttattaaaatacatcctgcaa |
20169616 |
T |
|
| Q |
172 |
ttaagtaaatcaaatcacatagaaggcaccagaggatagcaccaacgaggttatttcaagaag-nnnnnnnnntctgagatatgcacaccttggttagaa |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
20169617 |
ctaagtaaatcaaatcacatagaaggcaccagaggatagcaccaacgaggttatttcaagaagaaaaaaaaaaactgagatatgcacaccttggttagaa |
20169716 |
T |
|
| Q |
271 |
aatc |
274 |
Q |
| |
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|||| |
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| T |
20169717 |
aatc |
20169720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 20251188 - 20251034
Alignment:
| Q |
67 |
tatattatcatatagacaaaatattttagggtttgcttggaatagtggtattgctatttannnnnnn-----ccaataactaaatcaacttattaaaata |
161 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
20251188 |
tatattatcatatagccaaaatattttagggtttgcttggaatagtggtattgctatttatttattttttttccgataactaaatcaacttattaaaata |
20251089 |
T |
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| Q |
162 |
catcctgcaattaagtaaatcaaatcacatagaaggcaccagaggatagcaccaa |
216 |
Q |
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| T |
20251088 |
catcctgcaactaagtaaatcaaatcacatagaaggcaccagaggatagcaccaa |
20251034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 20169416 - 20169505
Alignment:
| Q |
1 |
ccacatcaaatacaataatcagctatgcaaatatgtatcaacttattaaaatataaccaaaatatttatattatcatatagacaaaatat |
90 |
Q |
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| T |
20169416 |
ccacatcaaatacaataatcagctatgcaaatatgtatcaacttattaaaatatagccaaaatatttatattatcatatagccaaaatat |
20169505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 20143977 - 20143850
Alignment:
| Q |
83 |
caaaatattttagggtttgcttggaatagtggtattgctatttannnnnnnccaataactaaatcaacttattaaaatacatcctgcaattaagtaaatc |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| | | || |||||||||||| |||||||||||||||||||||||||| |
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| T |
20143977 |
caaaatattttagggtttgcttggaatagtggtattgcatttttttttt---cgaaaattaaatcaactta---aaatacatcctgcaattaagtaaatc |
20143884 |
T |
|
| Q |
183 |
aaatcacatagaaggcaccagaggatagcaccaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
20143883 |
aaatcacatagaaggcaccagaggatagcaccaa |
20143850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 20358519 - 20358465
Alignment:
| Q |
67 |
tatattatcatatagacaaaatattttagggtttgcttggaatagtggtattgct |
121 |
Q |
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||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| |
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|
| T |
20358519 |
tatattatcatatagccaaaatattttagggtttgcttagaataatggtattgct |
20358465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 20358867 - 20358835
Alignment:
| Q |
4 |
catcaaatacaataatcagctatgcaaatatgt |
36 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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|
| T |
20358867 |
catcaaatacaataatcagctatgcaaatatgt |
20358835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 34
Target Start/End: Complemental strand, 20144359 - 20144328
Alignment:
| Q |
3 |
acatcaaatacaataatcagctatgcaaatat |
34 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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|
| T |
20144359 |
acatcaaatacaataatcagctatgcaaatat |
20144328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 274
Target Start/End: Complemental strand, 20250999 - 20250970
Alignment:
| Q |
245 |
ctgagatatgcacaccttggttagaaaatc |
274 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
20250999 |
ctgagatatgcacaccttggttagaaaatc |
20250970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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