View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15456_low_47 (Length: 277)

Name: NF15456_low_47
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15456_low_47
NF15456_low_47
[»] chr2 (6 HSPs)
chr2 (1-260)||(27735978-27736237)
chr2 (119-238)||(27724758-27724877)
chr2 (205-244)||(34324900-34324939)
chr2 (203-245)||(27717428-27717470)
chr2 (203-244)||(7435713-7435754)
chr2 (203-244)||(7524542-7524583)
[»] chr8 (3 HSPs)
chr8 (196-260)||(14682388-14682452)
chr8 (205-240)||(13473340-13473375)
chr8 (205-241)||(26606659-26606695)
[»] scaffold0129 (2 HSPs)
scaffold0129 (205-248)||(17607-17650)
scaffold0129 (205-238)||(34013-34046)
[»] chr5 (4 HSPs)
chr5 (205-244)||(30651131-30651170)
chr5 (205-244)||(31777477-31777516)
chr5 (205-247)||(9763942-9763984)
chr5 (205-245)||(19163654-19163694)
[»] chr3 (1 HSPs)
chr3 (205-248)||(2703336-2703379)
[»] chr1 (2 HSPs)
chr1 (208-245)||(368367-368404)
chr1 (207-247)||(344684-344724)
[»] chr6 (1 HSPs)
chr6 (208-240)||(2742334-2742366)


Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 27736237 - 27735978
Alignment:
Q  1 tcaagttgccacatccttttgacggaaaccgtggctattatcagaccgtaagtattttaagttccggtattaatggcactctttgcatctgtgataatca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27736237 tcaagttgccacatccttttgacggaaaccgtggctattatcagaccgtaagtattttaagttccggtattaatggcactctttgcatctgtgataataa 27736138  T
Q  101 gcgtgggttaactaatgcgttatggaatccggctactggggaagtaaaaattattcctcaaaataaggctcgcttgtcttatggattagaaactcatttt 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27736137 ccgtgggttaactaatgcgttatggaatccggctactggggaagtaaaaattattcctcaaaataaggctcgcttgtcttatggattagaaactcatttt 27736038  T
Q  201 aatattcatggatttggttatgatcatgttagagatgattataaagtccttgagtatgtt 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27736037 aatattcatggatttggttatgatcatgttagagatgattataaagtccttcagtatgtt 27735978  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 27724877 - 27724758
Alignment:
Q  119 gttatggaatccggctactggggaagtaaaaattattcctcaaaataaggctcgcttgtcttatggattagaaactcattttaatattcatggatttggt 218  Q
    |||||||||||| ||||| |||||| |||| | | ||||||||||||||||| |  |||  |||| ||| ||| ||  ||||||||||||||||||||||    
T  27724877 gttatggaatccagctaccggggaattaaatagtgttcctcaaaataaggctaggatgtactatgaatttgaacctatttttaatattcatggatttggt 27724778  T
Q  219 tatgatcatgttagagatga 238  Q
    ||||| |||||| |||||||    
T  27724777 tatgaccatgttcgagatga 27724758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 244
Target Start/End: Original strand, 34324900 - 34324939
Alignment:
Q  205 ttcatggatttggttatgatcatgttagagatgattataa 244  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  34324900 ttcatggatttggttatgaccatgttagagatgactataa 34324939  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 27717470 - 27717428
Alignment:
Q  203 tattcatggatttggttatgatcatgttagagatgattataaa 245  Q
    ||||||||||||||| ||||| |||||||||||||| ||||||    
T  27717470 tattcatggatttggctatgaccatgttagagatgactataaa 27717428  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 7435754 - 7435713
Alignment:
Q  203 tattcatggatttggttatgatcatgttagagatgattataa 244  Q
    ||||||||| |||||||||||||||||||  |||||||||||    
T  7435754 tattcatgggtttggttatgatcatgttatggatgattataa 7435713  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 7524583 - 7524542
Alignment:
Q  203 tattcatggatttggttatgatcatgttagagatgattataa 244  Q
    ||||||||| ||||||||||||| |||||| |||||||||||    
T  7524583 tattcatgggtttggttatgatcgtgttagggatgattataa 7524542  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 14682452 - 14682388
Alignment:
Q  196 attttaatattcatggatttggttatgatcatgttagagatgattataaagtccttgagtatgtt 260  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||| |||||| || |||||    
T  14682452 attttactattcatggatttggttatgatcgtgttagagatgattataaggtccttcagcatgtt 14682388  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 240
Target Start/End: Complemental strand, 13473375 - 13473340
Alignment:
Q  205 ttcatggatttggttatgatcatgttagagatgatt 240  Q
    |||||| |||||||||||||||||||||||||||||    
T  13473375 ttcatgcatttggttatgatcatgttagagatgatt 13473340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 26606659 - 26606695
Alignment:
Q  205 ttcatggatttggttatgatcatgttagagatgatta 241  Q
    ||||||||||||||||||||  |||||||||||||||    
T  26606659 ttcatggatttggttatgattctgttagagatgatta 26606695  T

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Target: scaffold0129 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 248
Target Start/End: Complemental strand, 17650 - 17607
Alignment:
Q  205 ttcatggatttggttatgatcatgttagagatgattataaagtc 248  Q
    ||||||||||||||||||| |||||||||||||| || ||||||    
T  17650 ttcatggatttggttatgaccatgttagagatgactacaaagtc 17607  T

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Target: scaffold0129; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 34046 - 34013
Alignment:
Q  205 ttcatggatttggttatgatcatgttagagatga 238  Q
    ||||||||||||||||||| ||||||||||||||    
T  34046 ttcatggatttggttatgagcatgttagagatga 34013  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 244
Target Start/End: Original strand, 30651131 - 30651170
Alignment:
Q  205 ttcatggatttggttatgatcatgttagagatgattataa 244  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  30651131 ttcatggatttggttatgaccatgttagagatgactataa 30651170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 244
Target Start/End: Original strand, 31777477 - 31777516
Alignment:
Q  205 ttcatggatttggttatgatcatgttagagatgattataa 244  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  31777477 ttcatggatttggttatgaccatgttagagatgactataa 31777516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 9763942 - 9763984
Alignment:
Q  205 ttcatggatttggttatgatcatgttagagatgattataaagt 247  Q
    ||||||| ||||| |||||||||||||||||||| ||||||||    
T  9763942 ttcatgggtttggatatgatcatgttagagatgactataaagt 9763984  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 19163694 - 19163654
Alignment:
Q  205 ttcatggatttggttatgatcatgttagagatgattataaa 245  Q
    ||||||||||||| |||||  ||||||||||||||||||||    
T  19163694 ttcatggatttggctatgacaatgttagagatgattataaa 19163654  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 2703336 - 2703379
Alignment:
Q  205 ttcatggatttggttatgatcatgttagagatgattataaagtc 248  Q
    ||||||||||||||||||| |||||||| ||||| |||||||||    
T  2703336 ttcatggatttggttatgaccatgttagggatgactataaagtc 2703379  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 245
Target Start/End: Original strand, 368367 - 368404
Alignment:
Q  208 atggatttggttatgatcatgttagagatgattataaa 245  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  368367 atggatttggttatgattatgttagagatgactataaa 368404  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 344684 - 344724
Alignment:
Q  207 catggatttggttatgatcatgttagagatgattataaagt 247  Q
    ||||||||||||||||| ||||| |||||||| ||||||||    
T  344684 catggatttggttatgaccatgtcagagatgactataaagt 344724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 2742366 - 2742334
Alignment:
Q  208 atggatttggttatgatcatgttagagatgatt 240  Q
    |||| ||||||||||||||||||||||||||||    
T  2742366 atggttttggttatgatcatgttagagatgatt 2742334  T

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