View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_low_5 (Length: 648)
Name: NF15456_low_5
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 223 - 456
Target Start/End: Original strand, 26305665 - 26305898
Alignment:
| Q |
223 |
agagaacacaagtgctaacggcctctttagcaggaagaaaagaaagaatagaaccaataatgtggttaggtaggtcgcttatcttgtcttgaccgttgtt |
322 |
Q |
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| T |
26305665 |
agagaacacaagtgctaacggcctctttagcaggaagaaaagaaagaatagaaccaataatgtggttaggtaggtcgcttatcttgtcttgaccgttgtt |
26305764 |
T |
|
| Q |
323 |
gtaccttagccgttgagaagactcgtcctcatgtttaccatatgcattaacaaaacccagttccatttttatagcaagttcatacaaatagaatataata |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||| |
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| T |
26305765 |
gtaccttagccgttgagaagactcgtcctcatgtttaccatatgcattaacaaaacccagttccatttttatagcaagttcctgcaaatagaagataata |
26305864 |
T |
|
| Q |
423 |
tgtcaagcactgtatatacacatatcactatttt |
456 |
Q |
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|||||||||||||||||||||| ||||||||||| |
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| T |
26305865 |
tgtcaagcactgtatatacacacatcactatttt |
26305898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 26305296 - 26305513
Alignment:
| Q |
13 |
gagatgaaagactagcaaaggaaggaaatatcgcaatgcaatttttcgtaactaatt--tctaaggactggcattcgaaaagggaattagaatggacgac |
110 |
Q |
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| T |
26305296 |
gagatgaaagactagcaaaggaaggaaatatcgcaatgcaatttttcataactaattcttctaagaactggcattcgaaaagggaattagattggaagac |
26305395 |
T |
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| Q |
111 |
gcgttcttcactcggtgacagtgactctaaacatatgtttttgacacttcgacttgaaacgaaagaaaccaactcattaatattgcaaccattatggtca |
210 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||| |
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| T |
26305396 |
gcgttcttcactcggtaaaagtgactctaaacatatgtttttgacacttcgacttgaaacgaaagaaaccaactcattaatatcgcaaccatcatagtca |
26305495 |
T |
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| Q |
211 |
tagtgaacagaaagagaa |
228 |
Q |
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| T |
26305496 |
tagtgaacagaaagagaa |
26305513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 1e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 456 - 630
Target Start/End: Original strand, 13620555 - 13620732
Alignment:
| Q |
456 |
taaacctcatgtatatgccactcacacccctttatttt---ctcacatgacacaaacctcccttgctattattagccatctaactcccgttggtattaac |
552 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13620555 |
taaacctcatgtatatgccactcacacccctttatttttttctcacatgacacaaacctcccttgctattattagccatctaactcccgttggtattaac |
13620654 |
T |
|
| Q |
553 |
cttttggttcctatgagaaagggggtggtttaactattttctcacacctttactatgaagcatggacacccacggatt |
630 |
Q |
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| T |
13620655 |
cttttggttcctatgagaaagggggtggtttaactattttctcacacctttactatgaagtatggacacccatggatt |
13620732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 249 - 316
Target Start/End: Original strand, 34755841 - 34755908
Alignment:
| Q |
249 |
ttagcaggaagaaaagaaagaatagaaccaataatgtggttaggtaggtcgcttatcttgtcttgacc |
316 |
Q |
| |
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|||| |||||||||| ||||||| ||||||||||||||| |||||||| ||||||| ||||||||| |
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| T |
34755841 |
ttagtaggaagaaaaaaaagaatgtaaccaataatgtggtcaggtaggttgcttatcaagtcttgacc |
34755908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 323
Target Start/End: Original strand, 34747504 - 34747578
Alignment:
| Q |
249 |
ttagcaggaagaaaagaaagaatagaaccaataatgtggttaggtaggtcgcttatcttgtcttgaccgttgttg |
323 |
Q |
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|||| ||||||||||||||||| ||||||||||||||| |||||||| ||||||| |||||| || |||||| |
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| T |
34747504 |
ttagtaggaagaaaagaaagaacgcaaccaataatgtggtcaggtaggttgcttatcaagtcttgtcccttgttg |
34747578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 34742947 - 34742996
Alignment:
| Q |
256 |
gaagaaaagaaagaatagaaccaataatgtggttaggtaggtcgcttatc |
305 |
Q |
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|||||||||||||||| ||||||||||||||| |||||||| ||||||| |
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| T |
34742947 |
gaagaaaagaaagaatgcaaccaataatgtggtcaggtaggttgcttatc |
34742996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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