View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_low_50 (Length: 270)
Name: NF15456_low_50
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_low_50 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 7724016 - 7724273
Alignment:
| Q |
13 |
attatactaatattgtttttggatatcatagccgatggcttgcccctttcccttgtttgaccattgtttaattgctctctattattttactctcttatca |
112 |
Q |
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| T |
7724016 |
attatgctaatattgttcttggatatcatagccgatggcttgtccctttcccttgtttgagcattgtttaattgctctctgttattttactctcttatca |
7724115 |
T |
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| Q |
113 |
tttttcgcttgttccttttataaactcatatgttcttctctaatacatcttatgcagttgtgcttcatagaatgttttcttgttgataatatattccatt |
212 |
Q |
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| T |
7724116 |
ttttttacttgttccttttataaacccatatgttcttctctaatacttcttgtgcagttgtgcttcatagaatgttttcttgttgataatatattccatt |
7724215 |
T |
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| Q |
213 |
ctgatttgttnnnnnnncaattttttagttaaaaatggaaagccggaaagtgagctct |
270 |
Q |
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| T |
7724216 |
ctgattcgttaaaaaaacaattttttagttaaaaattgaaagccggaaagtgagctct |
7724273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 270
Target Start/End: Original strand, 7730173 - 7730415
Alignment:
| Q |
20 |
taatattgtttttggatatcatagccgatggcttgcccctttcccttgtttgaccattgtttaattgctctctattattttactctcttatcatttttcg |
119 |
Q |
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| T |
7730173 |
taatattgtttttggatatcatagccgatggcttgtccctttcccttgtttgagcattgtttaattgctctcttttattct--tctcttatcatttttta |
7730270 |
T |
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| Q |
120 |
cttgttccttttataaactcatatgttcttctctaatacatcttatgcagttgtgcttcatagaatgttttcttgttg---ata-atatattccattctg |
215 |
Q |
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| T |
7730271 |
tttgttcctttaataaactc---tgatcttctctagtacatc--------ttgtgctacataaaatgttttcttgttggaaatatatatattccattctt |
7730359 |
T |
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| Q |
216 |
atttgtt-nnnnnnncaattttttagttaaaaatggaaagccggaaagtgagctct |
270 |
Q |
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| T |
7730360 |
attcattaaaaaaaacatttttttagttaaaaattgaaagccggaaagtgagctct |
7730415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 7716253 - 7716437
Alignment:
| Q |
19 |
ctaatattgtttttggatatcatagccgatggcttgcccctttcccttgtttgaccattgtttaattgctctctattattttactctcttatcatttttc |
118 |
Q |
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| T |
7716253 |
ctaatattgtttttgggtatcatagctagtggcttgcccctttctcttgtttcgacattgtttaattgctctctattatttttctctcatatcaatattt |
7716352 |
T |
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| Q |
119 |
gcttgttccttttataaactcatatgttcttctctaatacatcttatgcagttgtgcttcatagaatgttttcttgttgataatatattccatt |
212 |
Q |
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| T |
7716353 |
acttgtttcttttataatctctgatgttcttct-taatacatc--------ttgtgctgcatagaatgtttttttgttggtaatatattccatt |
7716437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 7716458 - 7716495
Alignment:
| Q |
233 |
ttttttagttaaaaatggaaagccggaaagtgagctct |
270 |
Q |
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| T |
7716458 |
ttttttagttaaaaactgaaagccggaaagtgagctct |
7716495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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