View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15456_low_55 (Length: 262)
Name: NF15456_low_55
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_low_55 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 35429427 - 35429668
Alignment:
| Q |
7 |
tcgaataatatggaacgttggagatgaatgtgctgctccgtagagttaccacactcgaggttgaagaagatggattagatcaatactatcaatgttctat |
106 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35429427 |
tcgaagaatgtggaacgttggagatgaatgtgctgctccgtagagttaccacactcgaggttgaagaagatggattagatcaatactatcaatgttctat |
35429526 |
T |
|
| Q |
107 |
ttctcaacaaaatgtgggtttgtcattgaaatcagttgatgaaactatttcaaattccaacgataaatgttcaatttgtttggaggagttgcacaacgaa |
206 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35429527 |
ttctcaacaaaatgttggtttgtcattgaaatcggttgatgaaactatttcaaattccaacgataaatgttcaatttgtttggaggagttgcacaacgaa |
35429626 |
T |
|
| Q |
207 |
tcgcagtcaaaactctttcatacaaaatgctctcatgttttt |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35429627 |
tcgcagtcaaaactctttcatacaaaatgctctcatgttttt |
35429668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 35420288 - 35420529
Alignment:
| Q |
7 |
tcgaataatatggaacgttggagatgaatgtgctgctccgtagagttaccacactcgaggttgaagaagatggattagatcaatactatcaatgttctat |
106 |
Q |
| |
|
||||| ||| |||||| |||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35420288 |
tcgaagaatctggaacattggagatgaatgtgctgctccttagagttactacactcgttgttgaagaagatggattagatcaatactatcaaagttctat |
35420387 |
T |
|
| Q |
107 |
ttctcaacaaaatgtgggtttgtcattgaaatcagttgatgaaactatttcaaattccaacgataaatgttcaatttgtttggaggagttgcacaacgaa |
206 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||| | || ||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35420388 |
ttatcaacaaaatgtgggtttgtcatcgaaatcggatgttgaaactctttcaaattccaccgatgaatgttcaatttgtttggaggagttgcacaacgaa |
35420487 |
T |
|
| Q |
207 |
tcgcagtcaaaactctttcatacaaaatgctctcatgttttt |
248 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
35420488 |
tcgcagtcagaactctttcatacaaaatgctctcatattttt |
35420529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 253
Target Start/End: Original strand, 35423499 - 35423533
Alignment:
| Q |
219 |
ctctttcatacaaaatgctctcatgtttttgatga |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
|
|
| T |
35423499 |
ctctttcatacaaaatgctctcatgtttttcatga |
35423533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University