View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15456_low_60 (Length: 250)

Name: NF15456_low_60
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15456_low_60
NF15456_low_60
[»] chr3 (49 HSPs)
chr3 (1-244)||(19333453-19333696)
chr3 (104-244)||(19460988-19461128)
chr3 (105-244)||(18164618-18164757)
chr3 (105-244)||(19375150-19375289)
chr3 (109-244)||(19399176-19399311)
chr3 (106-244)||(19436336-19436474)
chr3 (105-238)||(18143710-18143843)
chr3 (105-244)||(17941200-17941339)
chr3 (105-244)||(18102898-18103037)
chr3 (105-244)||(19350865-19351004)
chr3 (105-244)||(19392593-19392732)
chr3 (104-244)||(18115421-18115561)
chr3 (105-244)||(16676669-16676808)
chr3 (105-244)||(18022264-18022403)
chr3 (105-244)||(19419451-19419590)
chr3 (105-242)||(19413660-19413797)
chr3 (108-244)||(18015562-18015698)
chr3 (104-244)||(25462506-25462646)
chr3 (104-244)||(19380361-19380501)
chr3 (105-244)||(14896795-14896934)
chr3 (105-244)||(18146286-18146425)
chr3 (106-244)||(18107908-18108046)
chr3 (105-244)||(17728085-17728224)
chr3 (105-244)||(19029314-19029453)
chr3 (3-66)||(18103052-18103115)
chr3 (7-69)||(17728008-17728070)
chr3 (7-69)||(19029237-19029299)
chr3 (98-224)||(24493816-24493942)
chr3 (7-68)||(17949438-17949499)
chr3 (7-68)||(19375305-19375366)
chr3 (7-67)||(19380514-19380574)
chr3 (5-68)||(19399328-19399391)
chr3 (5-66)||(19436490-19436551)
chr3 (3-68)||(18146441-18146506)
chr3 (3-68)||(24493742-24493807)
chr3 (7-68)||(25462661-25462722)
chr3 (7-59)||(18143862-18143914)
chr3 (3-59)||(18164776-18164832)
chr3 (3-66)||(14896714-14896777)
chr3 (7-62)||(19419603-19419658)
chr3 (3-68)||(17941358-17941423)
chr3 (6-51)||(18108067-18108112)
chr3 (7-51)||(19351031-19351075)
chr3 (7-62)||(18022419-18022474)
chr3 (12-59)||(19392769-19392816)
chr3 (206-244)||(19424045-19424083)
chr3 (25-62)||(19424233-19424270)
chr3 (3-59)||(16676839-16676895)
chr3 (3-51)||(19413821-19413869)
[»] chr6 (2 HSPs)
chr6 (105-241)||(13667279-13667415)
chr6 (6-51)||(2509635-2509680)
[»] scaffold2156 (2 HSPs)
scaffold2156 (98-244)||(328-474)
scaffold2156 (5-71)||(254-319)
[»] scaffold0640 (1 HSPs)
scaffold0640 (3-244)||(4856-5079)
[»] chr4 (4 HSPs)
chr4 (105-244)||(15531819-15531961)
chr4 (5-62)||(15531977-15532034)
chr4 (7-62)||(2710904-2710959)
chr4 (112-173)||(2710997-2711058)
[»] chr8 (2 HSPs)
chr8 (105-241)||(8458944-8459080)
chr8 (7-51)||(8459107-8459151)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 49)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 19333696 - 19333453
Alignment:
Q  1 ttactaaggttgagatattttaaggaagaaagtgaagaaagccaatgaagactatccatgtgcagagttttcnnnnnnnctaaatcgacaaatttgttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  19333696 ttactaaggttgagatattttaaggaagaaagtgaagaaagccaatgaagactatccatgtgcagagttttctttttttctaaatcgacaaatttgttga 19333597  T
Q  101 ggagggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19333596 ggagggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaa 19333497  T
Q  201 gtaactgagaaactcaagttctagaatacaaagattcatctcac 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  19333496 gtaactgagaaactcaagttctagaatacaaagattcatctcac 19333453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 104 - 244
Target Start/End: Complemental strand, 19461128 - 19460988
Alignment:
Q  104 gggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagta 203  Q
    |||||||||||||||| | ||| |||||||||||||||||||||||| |||||||||||| | ||||||| |||||| ||||||||||||||||||||||    
T  19461128 gggataagtcaaggtagaaaaggttagatgaatgtgtgatgttgtgttgaatggatggaaatcttatcacatcaaattcattcagactcaaatccaagta 19461029  T
Q  204 actgagaaactcaagttctagaatacaaagattcatctcac 244  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19461028 actgagaaactcaagttctagaatacaaagattcatctcac 19460988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 105 - 244
Target Start/End: Complemental strand, 18164757 - 18164618
Alignment:
Q  105 ggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaa 204  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||| |||| |||| |||| ||||||| |||||  |||| |||||||||||||||| |    
T  18164757 ggataagtcaaggtagacaagtttagatgaatgtgtgaagttgtgttgaattgatgtaattcttatcacatcaaaatcattaagactcaaatccaagtga 18164658  T
Q  205 ctgagaaactcaagttctagaatacaaagattcatctcac 244  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  18164657 ctgagaaactcaagttctagaatacaaagattcatctcac 18164618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 105 - 244
Target Start/End: Complemental strand, 19375289 - 19375150
Alignment:
Q  105 ggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaa 204  Q
    ||||||||||||| | | ||| |||||||||||||||| ||||||| ||||||| |||||| |||||||||||||| |||| | ||||||||||||||||    
T  19375289 ggataagtcaaggaacaaaaggttagatgaatgtgtgaagttgtgttgaatggacggaattcttatcacgtcaaattcattgaaactcaaatccaagtaa 19375190  T
Q  205 ctgagaaactcaagttctagaatacaaagattcatctcac 244  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  19375189 ctgagaaactcaagttctagaatataaagattcatctcac 19375150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 109 - 244
Target Start/End: Complemental strand, 19399311 - 19399176
Alignment:
Q  109 aagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactga 208  Q
    ||||||| || |||||||||||||||||||||||| |||||| |||||||||||||| ||||||| | |||| |||||  ||||||||||||||||||||    
T  19399311 aagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactga 19399212  T
Q  209 gaaactcaagttctagaatacaaagattcatctcac 244  Q
    |||||||||||||||||||||| |||||||||||||    
T  19399211 gaaactcaagttctagaatacagagattcatctcac 19399176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 106 - 244
Target Start/End: Complemental strand, 19436474 - 19436336
Alignment:
Q  106 gataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaac 205  Q
    |||||||||||||| | ||||||||||||||||||||| |||||| ||||||||| |||| ||||||| |||||  |||||| |||||||||||||||||    
T  19436474 gataagtcaaggtagagaagtttagatgaatgtgtgatattgtgttgaatggatgaaattcttatcacatcaaaatcattcacactcaaatccaagtaac 19436375  T
Q  206 tgagaaactcaagttctagaatacaaagattcatctcac 244  Q
    | ||||||||||||| |||||||||||||||||||||||    
T  19436374 taagaaactcaagttttagaatacaaagattcatctcac 19436336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 18143843 - 18143710
Alignment:
Q  105 ggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaa 204  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||| ||||||  |||||  |||| |  |||||||||||||||    
T  18143843 ggataagtcaaggtagacaagtttagaggaatgtgtgatgttgtgttgaatggatggaattcttatcatatcaaaatcattgaatctcaaatccaagtaa 18143744  T
Q  205 ctgagaaactcaagttctagaatacaaagattca 238  Q
    || |||||||||||||||||||||||||||||||    
T  18143743 ctaagaaactcaagttctagaatacaaagattca 18143710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 105 - 244
Target Start/End: Complemental strand, 17941339 - 17941200
Alignment:
Q  105 ggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaa 204  Q
    |||||||| |||||  ||||||||||| |||||||||||||||||| |||||||||||||| ||||||| ||||||  |||   |||||||||||| |||    
T  17941339 ggataagttaaggtggacaagtttagaggaatgtgtgatgttgtgttgaatggatggaattcttatcacatcaaatttattatcactcaaatccaaataa 17941240  T
Q  205 ctgagaaactcaagttctagaatacaaagattcatctcac 244  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  17941239 ctgagaaactcaagttcaagaatacaaagattcatctcac 17941200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 105 - 244
Target Start/End: Complemental strand, 18103037 - 18102898
Alignment:
Q  105 ggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaa 204  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||   ||||   |||||||||||||||    
T  18103037 ggataagtcaaggtagacaagtttagatgaatgtgtgatgttgtgttgaatggatggaattcttatcacatcaaaatgattccagctcaaatccaagtaa 18102938  T
Q  205 ctgagaaactcaagttctagaatacaaagattcatctcac 244  Q
     |||||||||||||| | ||||||||||||||||| ||||    
T  18102937 ttgagaaactcaagtccaagaatacaaagattcatatcac 18102898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 105 - 244
Target Start/End: Complemental strand, 19351004 - 19350865
Alignment:
Q  105 ggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaa 204  Q
    ||||||||||||||| ||||||||||| |||||||||||||| | | |||||||||||||  ||||||| |||||   ||||  ||||||| ||||||||    
T  19351004 ggataagtcaaggtagacaagtttagaggaatgtgtgatgtttttttgaatggatggaatagttatcacatcaaaatgattctcactcaaacccaagtaa 19350905  T
Q  205 ctgagaaactcaagttctagaatacaaagattcatctcac 244  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19350904 ctgagaaactcaagttctagaatacaaagattcatctcac 19350865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 105 - 244
Target Start/End: Complemental strand, 19392732 - 19392593
Alignment:
Q  105 ggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaa 204  Q
    |||||||||||||||  |||||||||||||||| ||||||||| || |||||| ||||||| |||||||||||||  |||||   |||||||||||||||    
T  19392732 ggataagtcaaggtaggcaagtttagatgaatgcgtgatgttgcgttgaatggctggaattcttatcacgtcaaaatcattcccgctcaaatccaagtaa 19392633  T
Q  205 ctgagaaactcaagttctagaatacaaagattcatctcac 244  Q
    || ||||||||||||| |||||||||||||||||||||||    
T  19392632 cttagaaactcaagttgtagaatacaaagattcatctcac 19392593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 104 - 244
Target Start/End: Complemental strand, 18115561 - 18115421
Alignment:
Q  104 gggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagta 203  Q
    |||||||||||||||  | ||| |||||||||||||||| ||||||| |||||||||||| | ||||||| |||||  ||||    ||||||||||||||    
T  18115561 gggataagtcaaggtggaaaaggttagatgaatgtgtgaggttgtgttgaatggatggaaatcttatcacatcaaaatcatttgagctcaaatccaagta 18115462  T
Q  204 actgagaaactcaagttctagaatacaaagattcatctcac 244  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18115461 actgagaaactcaagttctagaatacaaagattcatctcac 18115421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 105 - 244
Target Start/End: Complemental strand, 16676808 - 16676669
Alignment:
Q  105 ggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaa 204  Q
    ||||||||||||||| ||||| ||||||| |||||||| ||| ||| |||||||||||||| |||| | ||||||| |||||   |||||||||||||||    
T  16676808 ggataagtcaaggtagacaaggttagatgcatgtgtgaggttttgttgaatggatggaattcttattaggtcaaattcattccagctcaaatccaagtaa 16676709  T
Q  205 ctgagaaactcaagttctagaatacaaagattcatctcac 244  Q
     | |||||||||||||||||||||||||||||||||||||    
T  16676708 attagaaactcaagttctagaatacaaagattcatctcac 16676669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 105 - 244
Target Start/End: Complemental strand, 18022403 - 18022264
Alignment:
Q  105 ggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaa 204  Q
    ||||||||||||||| | || ||||||||| ||||||||||||||| |||| ||||||||| ||||||| |||||| ||||  ||||||||||||| |||    
T  18022403 ggataagtcaaggtagaaaaatttagatgagtgtgtgatgttgtgttgaatagatggaattcttatcacatcaaattcattatgactcaaatccaaataa 18022304  T
Q  205 ctgagaaactcaagttctagaatacaaagattcatctcac 244  Q
    || |||||||||||||| |||||||||||||||| |||||    
T  18022303 ctaagaaactcaagttcaagaatacaaagattcagctcac 18022264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 105 - 244
Target Start/End: Complemental strand, 19419590 - 19419451
Alignment:
Q  105 ggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaa 204  Q
    |||||||||||| |  ||||| |||||||||||||||||||||||| |||||||||||||| ||||||| | ||||  |||  |||||||||||||||||    
T  19419590 ggataagtcaagtttcacaaggttagatgaatgtgtgatgttgtgttgaatggatggaattcttatcacattaaatttattatgactcaaatccaagtaa 19419491  T
Q  205 ctgagaaactcaagttctagaatacaaagattcatctcac 244  Q
    || |||||||||||||| | ||||||||||||||||||||    
T  19419490 ctaagaaactcaagttcaaaaatacaaagattcatctcac 19419451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 105 - 242
Target Start/End: Complemental strand, 19413797 - 19413660
Alignment:
Q  105 ggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaa 204  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||  ||| | ||||||| ||||| |  ||||   |||  | |||||||||||||||    
T  19413797 ggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatctcaccaaaataattgtggctcaaatccaagtaa 19413698  T
Q  205 ctgagaaactcaagttctagaatacaaagattcatctc 242  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19413697 ctgagaaactcaagttctagaatacaaagattcatctc 19413660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 244
Target Start/End: Complemental strand, 18015698 - 18015562
Alignment:
Q  108 taagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactg 207  Q
    |||||||||||| | ||| ||||| |||||||||||||||| | |||||||||||||  ||||||| |||||| |||| | ||||||||||||||||||     
T  18015698 taagtcaaggtagaaaaggttagaggaatgtgtgatgttgttttgaatggatggaatacttatcacatcaaattcattgaaactcaaatccaagtaacta 18015599  T
Q  208 agaaactcaagttctagaatacaaagattcatctcac 244  Q
    ||||| |||||||||| |||||||| |||||||||||    
T  18015598 agaaattcaagttctaaaatacaaaaattcatctcac 18015562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 104 - 244
Target Start/End: Complemental strand, 25462646 - 25462506
Alignment:
Q  104 gggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagta 203  Q
    ||||||||||||| ||  ||||||||||||||||||||||||||||| ||| || ||||||  |||| | || |||| ||||   ||| |||||||||||    
T  25462646 gggataagtcaagatagtcaagtttagatgaatgtgtgatgttgtgttgaaaggctggaatacttatgatgttaaattcattatcacttaaatccaagta 25462547  T
Q  204 actgagaaactcaagttctagaatacaaagattcatctcac 244  Q
    ||||||||||||||||||||||| ||| |||||||||||||    
T  25462546 actgagaaactcaagttctagaacacatagattcatctcac 25462506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 104 - 244
Target Start/End: Complemental strand, 19380501 - 19380361
Alignment:
Q  104 gggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagta 203  Q
    |||||||||||||||  | |||  ||||||||||||| ||||| ||| |||||||||||||| ||||||| |||||   |||   |||||||||||||||    
T  19380501 gggataagtcaaggtgcaaaaggatagatgaatgtgtaatgttttgttgaatggatggaattcttatcacatcaaaattattttcactcaaatccaagta 19380402  T
Q  204 actgagaaactcaagttctagaatacaaagattcatctcac 244  Q
    ||| ||||||| |||||| ||||||||||||||||||||||    
T  19380401 actaagaaacttaagttcaagaatacaaagattcatctcac 19380361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 105 - 244
Target Start/End: Original strand, 14896795 - 14896934
Alignment:
Q  105 ggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaa 204  Q
    ||||||||||||||| | |||  ||||||||||||||||||||||| || ||  ||||||  ||||||| |||||   ||||| ||||||||| ||||||    
T  14896795 ggataagtcaaggtagaaaaggctagatgaatgtgtgatgttgtgttgagtgactggaatacttatcacatcaaaatgattcatactcaaatctaagtaa 14896894  T
Q  205 ctgagaaactcaagttctagaatacaaagattcatctcac 244  Q
    ||||||||||| ||||| |||||||||||| |||||||||    
T  14896895 ctgagaaactccagttcgagaatacaaagactcatctcac 14896934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 105 - 244
Target Start/End: Complemental strand, 18146425 - 18146286
Alignment:
Q  105 ggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaa 204  Q
    ||||||||||||||| | ||| ||||||  ||||||||| |||||| |||||||||||||| ||||||  |||||   |||   ||||||||||||||||    
T  18146425 ggataagtcaaggtacaaaaggttagatatatgtgtgatattgtgttgaatggatggaattcttatcatatcaaaataattatcactcaaatccaagtaa 18146326  T
Q  205 ctgagaaactcaagttctagaatacaaagattcatctcac 244  Q
     | |||||||||||||| ||||||||||||||||||||||    
T  18146325 ttaagaaactcaagttcaagaatacaaagattcatctcac 18146286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 244
Target Start/End: Complemental strand, 18108046 - 18107908
Alignment:
Q  106 gataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaac 205  Q
    |||||||||||||    ||| ||||||||||||||||| |||||| |||||||||||||| |||| || |||||  |||||   |||||||| || ||||    
T  18108046 gataagtcaaggtgcgaaaggttagatgaatgtgtgatattgtgttgaatggatggaattcttatgacatcaaaatcattccagctcaaatctaaataac 18107947  T
Q  206 tgagaaactcaagttctagaatacaaagattcatctcac 244  Q
    ||||||||||||| || ||||||||||||||||||||||    
T  18107946 tgagaaactcaaggtcaagaatacaaagattcatctcac 18107908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 244
Target Start/End: Original strand, 17728085 - 17728224
Alignment:
Q  105 ggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaa 204  Q
    ||||||||||  ||| | ||| || |||||| |||||||||||||  |||||||||||||| ||||  | ||||||  ||| |  |||||||||||||||    
T  17728085 ggataagtcagtgtacaaaaggttcgatgaacgtgtgatgttgtgatgaatggatggaattcttatggcatcaaatttattgaagctcaaatccaagtaa 17728184  T
Q  205 ctgagaaactcaagttctagaatacaaagattcatctcac 244  Q
    || |||||||||||||| ||||||||||||||||||||||    
T  17728185 ctaagaaactcaagttcaagaatacaaagattcatctcac 17728224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 244
Target Start/End: Original strand, 19029314 - 19029453
Alignment:
Q  105 ggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaa 204  Q
    ||||||||||  ||| | ||| || |||||| |||||||||||||  |||||||||||||| ||||  | ||||||  ||| |  |||||||||||||||    
T  19029314 ggataagtcagtgtacaaaaggttcgatgaacgtgtgatgttgtgatgaatggatggaattcttatggcatcaaatttattgaagctcaaatccaagtaa 19029413  T
Q  205 ctgagaaactcaagttctagaatacaaagattcatctcac 244  Q
    || |||||||||||||| ||||||||||||||||||||||    
T  19029414 ctaagaaactcaagttcaagaatacaaagattcatctcac 19029453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 18103115 - 18103052
Alignment:
Q  3 actaaggttgagatattttaaggaagaaagtgaagaaagccaatgaagactatccatgtgcaga 66  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  18103115 actaaggttgagatattttaaggaagaaagtggagaaagccagtgaagactatccatgtgcaga 18103052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 17728008 - 17728070
Alignment:
Q  7 aggttgagatattttaaggaagaaagtgaagaaagccaatgaagactatccatgtgcagagtt 69  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17728008 aggttgagatattgtaaggaagaaagtggagaaagccaatgaagactatccatgtgcagagtt 17728070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 19029237 - 19029299
Alignment:
Q  7 aggttgagatattttaaggaagaaagtgaagaaagccaatgaagactatccatgtgcagagtt 69  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19029237 aggttgagatattgtaaggaagaaagtggagaaagccaatgaagactatccatgtgcagagtt 19029299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 224
Target Start/End: Original strand, 24493816 - 24493942
Alignment:
Q  98 tgaggagggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatc 197  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||| | |||||| ||||||  ||||||  |||||  | ||    ||||| ||    
T  24493816 tgaggggggataagtcaaggtagacaagtttagatgaatgtgtgatgttgttttgaatggttggaatacttatcaaatcaaaatcgttatcgctcaagtc 24493915  T
Q  198 caagtaactgagaaactcaagttctag 224  Q
    ||||||||| |||||||||||||||||    
T  24493916 caagtaactaagaaactcaagttctag 24493942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 17949499 - 17949438
Alignment:
Q  7 aggttgagatattttaaggaagaaagtgaagaaagccaatgaagactatccatgtgcagagt 68  Q
    ||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  17949499 aggttgagataatttaaggaagaaagtggagaaagccaatgaagattatccatgtgcagagt 17949438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 19375366 - 19375305
Alignment:
Q  7 aggttgagatattttaaggaagaaagtgaagaaagccaatgaagactatccatgtgcagagt 68  Q
    |||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  19375366 aggttgagatatttcaaggaagaaagtgaagaaagccattgaagattatccatgtgcagagt 19375305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 19380574 - 19380514
Alignment:
Q  7 aggttgagatattttaaggaagaaagtgaagaaagccaatgaagactatccatgtgcagag 67  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||    
T  19380574 aggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccatgtgcagag 19380514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 19399391 - 19399328
Alignment:
Q  5 taaggttgagatattttaaggaagaaagtgaagaaagccaatgaagactatccatgtgcagagt 68  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| ||||||||    
T  19399391 taaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccatttgcagagt 19399328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 19436551 - 19436490
Alignment:
Q  5 taaggttgagatattttaaggaagaaagtgaagaaagccaatgaagactatccatgtgcaga 66  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||| ||| ||||||||||    
T  19436551 taaggttgagatattttaaggaagaaagggaagaaagccaatcaagattattcatgtgcaga 19436490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 18146506 - 18146441
Alignment:
Q  3 actaaggttgagatattttaaggaagaaagtgaagaaagccaatgaagactatccatgtgcagagt 68  Q
    |||||||  ||||||||| ||||||||||||| |||||||||||||||| ||| ||||||||||||    
T  18146506 actaagggagagatatttcaaggaagaaagtggagaaagccaatgaagattatgcatgtgcagagt 18146441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 24493742 - 24493807
Alignment:
Q  3 actaaggttgagatattttaaggaagaaagtgaagaaagccaatgaagactatccatgtgcagagt 68  Q
    |||||||||||||||||| || |||||||||| || ||||||||||||| |||||||||| |||||    
T  24493742 actaaggttgagatatttcaacgaagaaagtggaggaagccaatgaagattatccatgtgaagagt 24493807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 25462722 - 25462661
Alignment:
Q  7 aggttgagatattttaaggaagaaagtgaagaaagccaatgaagactatccatgtgcagagt 68  Q
    ||||||||||||||||||||||| | || |||||||||||||||| |||||||||| |||||    
T  25462722 aggttgagatattttaaggaagataatggagaaagccaatgaagattatccatgtgaagagt 25462661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 18143914 - 18143862
Alignment:
Q  7 aggttgagatattttaaggaagaaagtgaagaaagccaatgaagactatccat 59  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| |||||||    
T  18143914 aggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccat 18143862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 18164832 - 18164776
Alignment:
Q  3 actaaggttgagatattttaaggaagaaagtgaagaaagccaatgaagactatccat 59  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| |||||||    
T  18164832 actaaggttgagatatttcaaggaagaaagtggagaaagccaatcaagattatccat 18164776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 14896714 - 14896777
Alignment:
Q  3 actaaggttgagatattttaaggaagaaagtgaagaaagccaatgaagactatccatgtgcaga 66  Q
    ||||||| |||||||||| ||||||||| ||| ||||||||||| |||| ||||||||||||||    
T  14896714 actaaggatgagatatttcaaggaagaatgtggagaaagccaatcaagattatccatgtgcaga 14896777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 19419658 - 19419603
Alignment:
Q  7 aggttgagatattttaaggaagaaagtgaagaaagccaatgaagactatccatgtg 62  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| ||| ||||||    
T  19419658 aggttgagatattttaaggaagaaagtggagaaagccaatcaagattatacatgtg 19419603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 17941423 - 17941358
Alignment:
Q  3 actaaggttgagatattttaaggaagaaagtgaagaaagccaatgaagactatccatgtgcagagt 68  Q
    |||||||  ||||||||| |||| ||||| || |||||||||||||||| |||||||||| |||||    
T  17941423 actaaggcggagatatttcaaggtagaaaatggagaaagccaatgaagattatccatgtgaagagt 17941358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 18108112 - 18108067
Alignment:
Q  6 aaggttgagatattttaaggaagaaagtgaagaaagccaatgaaga 51  Q
    |||| |||||||||| ||||||||| ||||||||||||||||||||    
T  18108112 aaggctgagatatttcaaggaagaatgtgaagaaagccaatgaaga 18108067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 19351075 - 19351031
Alignment:
Q  7 aggttgagatattttaaggaagaaagtgaagaaagccaatgaaga 51  Q
    |||||||||||||||| ||||||||||| ||||||||||| ||||    
T  19351075 aggttgagatattttatggaagaaagtggagaaagccaatcaaga 19351031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 18022474 - 18022419
Alignment:
Q  7 aggttgagatattttaaggaagaaagtgaagaaagccaatgaagactatccatgtg 62  Q
    |||| ||||||||| ||||||||||||||||||||||| | |||| |||| |||||    
T  18022474 aggtcgagatatttcaaggaagaaagtgaagaaagccagtcaagattatctatgtg 18022419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 19392816 - 19392769
Alignment:
Q  12 gagatattttaaggaagaaagtgaagaaagccaatgaagactatccat 59  Q
    ||||||||| || |||||||||| ||||||||||| ||||||||||||    
T  19392816 gagatatttcaatgaagaaagtggagaaagccaatcaagactatccat 19392769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 19424083 - 19424045
Alignment:
Q  206 tgagaaactcaagttctagaatacaaagattcatctcac 244  Q
    |||||||||||||||| |||||||||||||| |||||||    
T  19424083 tgagaaactcaagttcgagaatacaaagattgatctcac 19424045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 19424270 - 19424233
Alignment:
Q  25 gaagaaagtgaagaaagccaatgaagactatccatgtg 62  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  19424270 gaagaaagtgaagaaagccaatcaagattatccatgtg 19424233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 16676895 - 16676839
Alignment:
Q  3 actaaggttgagatattttaaggaagaaagtgaagaaagccaatgaagactatccat 59  Q
    |||||||| |||||| || ||||||||||||  | |||||||||||||| |||||||    
T  16676895 actaaggtcgagatacttcaaggaagaaagtataaaaagccaatgaagattatccat 16676839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 19413869 - 19413821
Alignment:
Q  3 actaaggttgagatattttaaggaagaaagtgaagaaagccaatgaaga 51  Q
    ||||||| |||||||||| || |||||||||| | ||||||||||||||    
T  19413869 actaagggtgagatatttcaacgaagaaagtggataaagccaatgaaga 19413821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 105 - 241
Target Start/End: Original strand, 13667279 - 13667415
Alignment:
Q  105 ggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaa 204  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||| |||| ||||||| |||||| ||||  ||||||||||||| ||     
T  13667279 ggataagtcaaggtagacaagtttagatgaatttgtgatgttgtgttgaatggatgaaatttttatcacatcaaattcattatgactcaaatccaaatag 13667378  T
Q  205 ctgagaaactcaagttctagaatacaaagattcatct 241  Q
    |||||||||| ||||||||||||||||||||||||||    
T  13667379 ctgagaaacttaagttctagaatacaaagattcatct 13667415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 2509680 - 2509635
Alignment:
Q  6 aaggttgagatattttaaggaagaaagtgaagaaagccaatgaaga 51  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  2509680 aaggttgagatattttaaggaagaaagtggagaaagccaatgaaga 2509635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2156 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold2156
Description:

Target: scaffold2156; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 98 - 244
Target Start/End: Original strand, 328 - 474
Alignment:
Q  98 tgaggagggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatc 197  Q
    ||||| |||||||||||||||| ||||||||||||||| |||||||||||||| || ||  ||||| | |||| ||||||||  ||||    ||||||||    
T  328 tgaggggggataagtcaaggtagacaagtttagatgaacgtgtgatgttgtgttgagtgattggaactcttataacgtcaaaatcattgtagctcaaatc 427  T
Q  198 caagtaactgagaaactcaagttctagaatacaaagattcatctcac 244  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||    
T  428 caagtaactcaaaaactcaagttctagaatacaaagattcatctcac 474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2156; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 254 - 319
Alignment:
Q  5 taaggttgagatattttaaggaagaaagtgaagaaagccaatgaagactatccatgtgcagagtttt 71  Q
    ||||| |||||||||| ||||| |||||||||||||||||||||||| |||||||||| ||||||||    
T  254 taaggatgagatattt-aaggatgaaagtgaagaaagccaatgaagattatccatgtgaagagtttt 319  T

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Target: scaffold0640 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 3 - 244
Target Start/End: Complemental strand, 5079 - 4856
Alignment:
Q  3 actaaggttgagatattttaaggaagaaagtgaagaaagccaatgaagactatccatgtgcagagttttcnnnnnnnctaaatcgacaaatttgttgagg 102  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||||||| |||||||||| ||||||||            ||| | ||      |||||    
T  5079 actaaggatgagatatttcaaggatgaaagtgaagaaagccaatgaagattatccatgtgaagagtttt------------atcaaaaa------tgagg 4998  T
Q  103 agggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagt 202  Q
     ||| |||||||||||| ||||||||||||||| |||||||||||||| || ||  ||||| | |||| ||||||||  ||||    |||||||||||||    
T  4997 ggggctaagtcaaggtagacaagtttagatgaacgtgtgatgttgtgttgagtgattggaactcttataacgtcaaaatcattgtagctcaaatccaagt 4898  T
Q  203 aactgagaaactcaagttctagaatacaaagattcatctcac 244  Q
    |||| | |||||||||||||||||||||||||||||||||||    
T  4897 aactcaaaaactcaagttctagaatacaaagattcatctcac 4856  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 105 - 244
Target Start/End: Complemental strand, 15531961 - 15531819
Alignment:
Q  105 ggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtg---tggaatggatggaattattatcacgtcaaatacattcagactcaaatccaag 201  Q
    ||||||||||||||| | ||| ||||||||||||||||| ||||    | |||||||||||||  ||| ||| |||||  ||||| |||||||||| |||    
T  15531961 ggataagtcaaggtacaaaaggttagatgaatgtgtgatattgttattttgaatggatggaatgcttagcacatcaaaatcattccgactcaaatcgaag 15531862  T
Q  202 taactgagaaactcaagttctagaatacaaagattcatctcac 244  Q
    ||||| ||||||||||||| |||||||||||||||||||||||    
T  15531861 taactaagaaactcaagttttagaatacaaagattcatctcac 15531819  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 15532034 - 15531977
Alignment:
Q  5 taaggttgagatattttaaggaagaaagtgaagaaagccaatgaagactatccatgtg 62  Q
    |||||||||||||||| ||||| ||||||| ||||||||||| |||| ||||||||||    
T  15532034 taaggttgagatatttcaaggatgaaagtggagaaagccaatcaagattatccatgtg 15531977  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 2710904 - 2710959
Alignment:
Q  7 aggttgagatattttaaggaagaaagtgaagaaagccaatgaagactatccatgtg 62  Q
    |||||||||||||| || |||||||||| ||||||||||| |||| |||| |||||    
T  2710904 aggttgagatatttcaaagaagaaagtggagaaagccaattaagattatctatgtg 2710959  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 2710997 - 2711058
Alignment:
Q  112 tcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcac 173  Q
    |||||||||| ||| ||||||| |||||||||||||||| ||| || ||||||  |||||||    
T  2710997 tcaaggtatataaggttagatgcatgtgtgatgttgtgttgaacgggtggaatagttatcac 2711058  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 105 - 241
Target Start/End: Complemental strand, 8459080 - 8458944
Alignment:
Q  105 ggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaa 204  Q
    ||||||||||||||  | ||| ||||||| |||||||||||||||| |||| ||||||||| ||||||| ||||||  ||  |  |||||||||||||||    
T  8459080 ggataagtcaaggtgcaaaaggttagatgcatgtgtgatgttgtgttgaatcgatggaattcttatcacatcaaatttatgtaagctcaaatccaagtaa 8458981  T
Q  205 ctgagaaactcaagttctagaatacaaagattcatct 241  Q
    || ||||||||||||||||||||  ||||||| ||||    
T  8458980 ctcagaaactcaagttctagaatggaaagattgatct 8458944  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 8459151 - 8459107
Alignment:
Q  7 aggttgagatattttaaggaagaaagtgaagaaagccaatgaaga 51  Q
    |||||||||| ||||||||||||||||| ||||||||| ||||||    
T  8459151 aggttgagattttttaaggaagaaagtggagaaagccattgaaga 8459107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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