View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15456_low_61 (Length: 250)

Name: NF15456_low_61
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15456_low_61
NF15456_low_61
[»] chr4 (5 HSPs)
chr4 (1-70)||(3926775-3926848)
chr4 (1-70)||(3915781-3915854)
chr4 (1-70)||(3952828-3952898)
chr4 (1-68)||(3812200-3812268)
chr4 (1-68)||(3821773-3821841)
[»] chr1 (1 HSPs)
chr1 (210-238)||(16858348-16858376)


Alignment Details
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 3926848 - 3926775
Alignment:
Q  1 tcatactttgaatgaggag---tattgtttgacattgtcttttccgcaaca-ccttcaacttattaacaaaaaa 70  Q
    |||||||||||||||||||   ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3926848 tcatactttgaatgaggaggagtattgtttgacattgtcttttccgcaacacccttcaacttattaacaaaaaa 3926775  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 3915854 - 3915781
Alignment:
Q  1 tcatactttgaatgaggag---tattgtttgacattgtcttttccgcaaca-ccttcaacttattaacaaaaaa 70  Q
    |||||||||||||||||||   ||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  3915854 tcatactttgaatgaggaggagtattgtttgacattgtcttttccgcaacacccttcaatttattaacaaaaaa 3915781  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 3952898 - 3952828
Alignment:
Q  1 tcatactttgaatgaggagtattgtttgacattgtcttttccgcaaca-ccttcaacttattaacaaaaaa 70  Q
    ||||||||||| |  |||| ||||||||||||||||||||| || ||| |||||| |||||||||||||||    
T  3952898 tcatactttgattcgggagaattgtttgacattgtcttttctgctacacccttcaccttattaacaaaaaa 3952828  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 3812200 - 3812268
Alignment:
Q  1 tcatactttgaatgaggagtattgtttgacattgtcttttccgcaaca-ccttcaacttattaacaaaa 68  Q
    ||||||||||| |||||||||||||||| ||||  | |||| || ||| ||||||||||||||||||||    
T  3812200 tcatactttgattgaggagtattgtttggcatttccctttctgctacacccttcaacttattaacaaaa 3812268  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 3821773 - 3821841
Alignment:
Q  1 tcatactttgaatgaggagtattgtttgacattgtcttttccgcaaca-ccttcaacttattaacaaaa 68  Q
    ||||||||| | |||||||||||||||| ||||  | |||| || ||| ||||||||||||||||||||    
T  3821773 tcatactttaattgaggagtattgtttggcatttccctttctgctacacccttcaacttattaacaaaa 3821841  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Original strand, 16858348 - 16858376
Alignment:
Q  210 ttaaggcttaaatgcacttttggccccct 238  Q
    |||||||||||||||||||||||||||||    
T  16858348 ttaaggcttaaatgcacttttggccccct 16858376  T

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