View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15456_low_62 (Length: 250)

Name: NF15456_low_62
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15456_low_62
NF15456_low_62
[»] chr6 (6 HSPs)
chr6 (1-240)||(702266-702505)
chr6 (1-240)||(717568-717807)
chr6 (1-240)||(710535-710774)
chr6 (1-240)||(712933-713172)
chr6 (1-240)||(716791-717027)
chr6 (136-240)||(722675-722779)
[»] chr1 (1 HSPs)
chr1 (18-240)||(35313621-35313843)
[»] chr5 (2 HSPs)
chr5 (114-233)||(20357809-20357928)
chr5 (127-233)||(20353927-20354033)
[»] chr4 (3 HSPs)
chr4 (114-233)||(5278442-5278561)
chr4 (114-233)||(5286423-5286542)
chr4 (127-233)||(5282535-5282641)
[»] chr2 (1 HSPs)
chr2 (97-233)||(6235378-6235514)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 702266 - 702505
Alignment:
Q  1 ttctagttgttatccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagcttttgtgagaacttctgaagagatttttggat 100  Q
    ||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  702266 ttctagtagttgtccacccagaattgtttttgaagattgtccactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggat 702365  T
Q  101 tagatccaaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  702366 tagatccaaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaa 702465  T
Q  201 gtgaatgagaccaattggaaacacaaaaacatctcctttg 240  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  702466 gtgaatgagaccaattggaaacacaaacacatctcctttg 702505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 717568 - 717807
Alignment:
Q  1 ttctagttgttatccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagcttttgtgagaacttctgaagagatttttggat 100  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  717568 ttctagttgttgtccacccagaattgtttttgaagattgtccactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggat 717667  T
Q  101 tagatccaaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaa 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  717668 tagatccaaatacagcattagcaattgtgattacaccaggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaa 717767  T
Q  201 gtgaatgagaccaattggaaacacaaaaacatctcctttg 240  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  717768 gtgaatgagaccaattggaaacacaaacacatctcctttg 717807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 710535 - 710774
Alignment:
Q  1 ttctagttgttatccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagcttttgtgagaacttctgaagagatttttggat 100  Q
    ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  710535 ttctagttgttgtccacccaaaattgtttttgaagattgtccactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggat 710634  T
Q  101 tagatccaaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaa 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  710635 tagatccaaatacagcattagcaattgtgattacaccaggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaa 710734  T
Q  201 gtgaatgagaccaattggaaacacaaaaacatctcctttg 240  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  710735 gtgaatgagaccaattggaaacacaaacacatctcctttg 710774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 713172 - 712933
Alignment:
Q  1 ttctagttgttatccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagcttttgtgagaacttctgaagagatttttggat 100  Q
    ||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  713172 ttctagttgttgtccacccagaattgtttttgaagattatccactatattattgtcaacttgaaaagctttggtgagaacttctgaagaaatttttggat 713073  T
Q  101 tagatccaaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaa 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||    
T  713072 tagatccaaatacagcattagcaattgtgattacaccaggattttggctgctaagtccagcaatagcaactgcatttccatacccaacattcaattgaaa 712973  T
Q  201 gtgaatgagaccaattggaaacacaaaaacatctcctttg 240  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  712972 gtgaatgaggccaattggaaacacaaacacatctcctttg 712933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 717027 - 716791
Alignment:
Q  1 ttctagttgttatccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagcttttgtgagaacttctgaagagatttttggat 100  Q
    ||||| ||||| |||| |||||||||||| ||||||||||||||||| |||||||| ||||||| ||| || ||||||| ||||||||| ||||   |||    
T  717027 ttctaattgttgtccaaccagaattgtttctgaagattgtcaactatgttattgtccacttgaagagccttggtgagaagttctgaagaaattt---gat 716931  T
Q  101 tagatccaaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaa 200  Q
    |||| ||||||||  | |||  ||| ||||| || | || ||| |||||| ||||||||| |||  |||| ||||||||||  |||| |||   ||||||    
T  716930 tagacccaaatacctccttaataatagtgataactcttgaattatggctgttaagtccagaaatgacaaccgcatttccatcccccatattatgttggaa 716831  T
Q  201 gtgaatgagaccaattggaaacacaaaaacatctcctttg 240  Q
    |||||| |||||||||||||||||||| ||||||||||||    
T  716830 gtgaataagaccaattggaaacacaaagacatctcctttg 716791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 722779 - 722675
Alignment:
Q  136 cctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagaccaattggaaacacaaaaacatctc 235  Q
    ||||||||||| ||||||| ||||| ||| ||||| |||||||||| |||   |||    | ||||||||||||||||||||||||||||||||||||||    
T  722779 cctggattttgactgctaaatccagaaattgcaaccgcatttccatctcctgtattatgctcgaagtgaatgagaccaattggaaacacaaaaacatctc 722680  T
Q  236 ctttg 240  Q
    |||||    
T  722679 ctttg 722675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 35313843 - 35313621
Alignment:
Q  18 ccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagcttttgtgagaacttctgaagagatttttggattagatccaaatacagca 117  Q
    ||||||||| |||||||||| ||| | || ||| || || |||||||| ||||| |||||||||||  |||| |||  ||| ||||||||||| ||||||    
T  35313843 ccagaattgcttttgaagatagtcgattacatttttatccacttgaaaggctttggtgagaacttccaaagaaattggtggtttagatccaaacacagca 35313744  T
Q  118 ttagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagaccaattg 217  Q
    || ||||| || || || || || |||||||| ||||| |||||||| ||||  || |  ||||| || || ||||||||||||||||||||||| ||||    
T  35313743 tttgcaatggtaatcactccagggttttggctactaagaccagcaatggcaatagcctccccataaccaacgttcaattggaagtgaatgagaccgattg 35313644  T
Q  218 gaaacacaaaaacatctcctttg 240  Q
    |||||||||| ||||| ||||||    
T  35313643 gaaacacaaatacatcacctttg 35313621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 114 - 233
Target Start/End: Original strand, 20357809 - 20357928
Alignment:
Q  114 agcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagacca 213  Q
    |||||| ||||  ||||| || ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||| || ||||| ||||||    
T  20357809 agcatttgcaacggtgataactcctggattttgactgctaagtccagcaatagcaacggcattgccatatcccacattcagttgaaaatgaataagacca 20357908  T
Q  214 attggaaacacaaaaacatc 233  Q
    ||||| |||||||| |||||    
T  20357909 attgggaacacaaacacatc 20357928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 127 - 233
Target Start/End: Complemental strand, 20354033 - 20353927
Alignment:
Q  127 gtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagaccaattggaaacacaa 226  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| || || |||||||||||||||| ||| || ||||| ||||||||||| |||||||    
T  20354033 gtgattactcctggattttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagttgaaaatgaataagaccaattgggaacacaa 20353934  T
Q  227 aaacatc 233  Q
    | |||||    
T  20353933 acacatc 20353927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 114 - 233
Target Start/End: Original strand, 5278442 - 5278561
Alignment:
Q  114 agcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagacca 213  Q
    |||||| ||||  ||||| || ||||||||||| ||||||||||||||||||||||| || || |||||||||||||||| ||| || ||||| ||||||    
T  5278442 agcatttgcaacagtgataactcctggattttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagttgaaaatgaataagacca 5278541  T
Q  214 attggaaacacaaaaacatc 233  Q
    ||||| |||||||| |||||    
T  5278542 attgggaacacaaacacatc 5278561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 114 - 233
Target Start/End: Original strand, 5286423 - 5286542
Alignment:
Q  114 agcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagacca 213  Q
    |||||| ||||  ||||| || ||||||||||| ||||||||||||||||||||||| || || |||||||||||||||| ||| || ||||| ||||||    
T  5286423 agcatttgcaacagtgataactcctggattttgactgctaagtccagcaatagcaacggcgttgccatatcccacattcagttgaaaatgaataagacca 5286522  T
Q  214 attggaaacacaaaaacatc 233  Q
    ||||| |||||||| |||||    
T  5286523 attgggaacacaaacacatc 5286542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 233
Target Start/End: Complemental strand, 5282641 - 5282535
Alignment:
Q  127 gtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagaccaattggaaacacaa 226  Q
    ||||| || ||||| ||||| ||||||||||||||||||||||| || || ||||||||||||||||  || || ||||| |||||||| || |||||||    
T  5282641 gtgataactcctgggttttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagctgaaaatgaataagaccaatcgggaacacaa 5282542  T
Q  227 aaacatc 233  Q
    | |||||    
T  5282541 acacatc 5282535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 233
Target Start/End: Original strand, 6235378 - 6235514
Alignment:
Q  97 ggattagatccaaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaatt 196  Q
    |||||||||  ||| | |||||| ||||  ||||| || ||||| ||||| ||||||||||||||||||||||| || || |||||||||||||| | ||    
T  6235378 ggattagatttaaacaaagcatttgcaacggtgataactcctgggttttgactgctaagtccagcaatagcaacagcgttgccatatcccacatttagtt 6235477  T
Q  197 ggaagtgaatgagaccaattggaaacacaaaaacatc 233  Q
    | || ||||| ||||||||||| |||||||| |||||    
T  6235478 gaaaatgaataagaccaattgggaacacaaacacatc 6235514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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