View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_low_67 (Length: 242)
Name: NF15456_low_67
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_low_67 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 16003228 - 16003443
Alignment:
| Q |
12 |
gattattcttatgtaggttcacttcctttttaattaaaattaaaaagcatatcttttgttttnnnnnnnnnnnnnntctgtcttcttttatttatttttc |
111 |
Q |
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| T |
16003228 |
gattattcttatgtaggttcacttcctttttaattaaaattaaaaagcatatcttttgttttaaattttttttttttttgtcttcttttatttctttttc |
16003327 |
T |
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| Q |
112 |
tgaaacagtctaaccaaaatatatgatatgaaaattcaatatgaaatc-gtcttctccatatttgattctgctatagccaggtctgatgtgaaaattctt |
210 |
Q |
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| T |
16003328 |
taaaacagtctaaccaaaatatatgatatgaaaattcaatatgaaatctgtcttctccataattgattctgctatagccaggtatgatgtgaaaattctt |
16003427 |
T |
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| Q |
211 |
tcaagcaacttcaaat |
226 |
Q |
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||||||| |||||||| |
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| T |
16003428 |
tcaagcagcttcaaat |
16003443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 35 - 226
Target Start/End: Original strand, 26794489 - 26794681
Alignment:
| Q |
35 |
tcctttttaattaaaattaaaaagcatatcttttgttttnnnnnnnnnnnnnntctgtcttcttttatttatttttctgaaacagtctaaccaaaatata |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| ||||||||||||| ||||||||||||||| |
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| T |
26794489 |
tcctttttaattaaaattaaaaagcatatcttttgtttaaaaaaaaaataaaatttgtcttcttttctttctttttctgaaacaatctaaccaaaatata |
26794588 |
T |
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| Q |
135 |
tgatatgaaaattcaatatgaaatc-gtcttctccatatttgattctgctatagccaggtctgatgtgaaaattctttcaagcaacttcaaat |
226 |
Q |
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| T |
26794589 |
tgatatgaaaattcaatatgaaatctgtcttctccatatttgattctgctatagccaggtctgatgtgaaaattcttacaagcagcttcaaat |
26794681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 40721439 - 40721654
Alignment:
| Q |
12 |
gattattcttatgtaggttcacttcctttttaattaaaattaaaaagcatatcttttgttttnnnnnnnnnnnnnntctgtcttcttttatttatttttc |
111 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||||| |
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| T |
40721439 |
gattattcttatgtaggtttacttcctttttaattaaaattaaaaagcatatcttttgttttaaaaaaaaaata--tatgtcttcttttctttctttttc |
40721536 |
T |
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| Q |
112 |
tgaaacagtctaaccaaaatatatgatat--gaaaattcaatatgaaatc-gtcttctccatatttgattctgctatagccaggtctgatgtgaaaattc |
208 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40721537 |
tgaaacagtctaaccaaaatatatgatatatgaaaattcaatatgaaatctgtcttctccatatttgattctgctatagccaggtcagatgtgaaaattc |
40721636 |
T |
|
| Q |
209 |
tttcaagcaacttcaaat |
226 |
Q |
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||||||||| |||||||| |
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| T |
40721637 |
tttcaagcagcttcaaat |
40721654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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