View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_low_68 (Length: 237)
Name: NF15456_low_68
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_low_68 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5591978 - 5592200
Alignment:
| Q |
1 |
cattggataagcaaaccctgaatgattagatgaatcgtaagatgttgttgcaatgagtaggttccaagcctcgccgggatggactgcatcccaaaacaca |
100 |
Q |
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| T |
5591978 |
cattggataagcaaaccctgaatgattagatgaatcgtaagatgttgttgcaatgagtaggttccaagcctcgccgggatggactgcatcccaaaacaca |
5592077 |
T |
|
| Q |
101 |
tactccctcctattagagcatggcctttcatcacgaatacacaatccaaccgcgcttattggacaacaaggagccattgaaaccgaaaaacctgagattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5592078 |
tactccctcctattagagcatggcctttcatcacgaatacacaatccaaccgcgcttattggacaacaaggagccattgaaaccgaaaaacctgagattc |
5592177 |
T |
|
| Q |
201 |
attgaacatgcagcttgattatg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
5592178 |
attgaacatgcagcttgattatg |
5592200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 5572305 - 5572526
Alignment:
| Q |
1 |
cattggataagcaaaccctgaatgattagatgaatcgtaagatgttgttgcaatgagtaggttccaagcctcgccgggatggactgcatcccaaaacaca |
100 |
Q |
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| T |
5572305 |
cattggataagtgaaccctggattattagatgaatcatacattcttgttgcaaagagtaggtaccaagcctcggtgggatggacttcatcccaaaacaca |
5572404 |
T |
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| Q |
101 |
tactccctcctattagagcatggcctttcatcacgaatacacaatccaaccgcgcttattggacaacaaggagccattgaaaccgaaaaacctgagattc |
200 |
Q |
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| T |
5572405 |
tagtcactcctattatagcatggcctttcatcaggaatacacaatccattcaaccttgatggacaacaaggagcatttgaaaccaaaaaacctgagattc |
5572504 |
T |
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| Q |
201 |
attgaacatgcagcttgattat |
222 |
Q |
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| T |
5572505 |
attgaacatgcagcatgattat |
5572526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 5579986 - 5580199
Alignment:
| Q |
1 |
cattggataagcaaaccctgaatgattagatgaatcgtaagatgttgttgcaatgagtaggttccaagcctcgccgggatggactgcatcccaaaacaca |
100 |
Q |
| |
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||||||||||| |||||||||| | ||||||||||||| | ||||||||||||||||| |||||||||| |||||| |||||||||||| ||||| |
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| T |
5579986 |
cattggataagtgaaccctgaattagtagatgaatcgtacattcttgttgcaatgagtaggctccaagcctcagtgggatgaactgcatcccaagacaca |
5580085 |
T |
|
| Q |
101 |
tactccctcctattagagcatggcctttcatcacgaatacacaatccaaccgcgcttattggacaacaaggagccattgaaaccgaaaaacctgagattc |
200 |
Q |
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| T |
5580086 |
tattcactcctattatagcatggcctttcatcacgaatgcacagtccatccaaccttgatggacaacaagaagcattttaaaccaaaaaacctgagattc |
5580185 |
T |
|
| Q |
201 |
attgaacatgcagc |
214 |
Q |
| |
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|||||||| ||||| |
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| T |
5580186 |
attgaacaagcagc |
5580199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 5585796 - 5585893
Alignment:
| Q |
45 |
ttgttgcaatgagtaggttccaagcctcgccgggatggactgcatcccaaaacacatactccctcctattagagcatggcctttcatcacgaatacac |
142 |
Q |
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|||||||| ||| ||||||||||||||| || ||||| | ||||||||||||||||||| | ||||||| ||||||||||||||||| |||||||| |
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| T |
5585796 |
ttgttgcagtgactaggttccaagcctcagtggtatggaattcatcccaaaacacatactctcccctattatagcatggcctttcatcaggaatacac |
5585893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 5575325 - 5575391
Alignment:
| Q |
76 |
gggatggactgcatcccaaaacacatactccctcctattagagcatggcctttcatcacgaatacac |
142 |
Q |
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| T |
5575325 |
gggatggacttcatcccaaaacgcatactcactcctattatagcatggcctttcatcaggaatacac |
5575391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 214
Target Start/End: Original strand, 5581802 - 5581940
Alignment:
| Q |
76 |
gggatggactgcatcccaaaacacatactccctcctattagagcatggcctttcatcacgaatacacaatccaaccgcgcttattggacaacaaggagcc |
175 |
Q |
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|||||||||| |||||||||| | ||| || ||||||||| ||||||||||||||| | | |||| ||||| | || ||||||||||||||| |
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| T |
5581802 |
gggatggacttcatcccaaaaaaaataatcactcctattatagcatggcctttcattagcataacaccttccaatcaacctcggtggacaacaaggagcg |
5581901 |
T |
|
| Q |
176 |
attgaaaccgaaaaacctgagattcattgaacatgcagc |
214 |
Q |
| |
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|||||||| |||| ||||||||||||| ||||| |||| |
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| T |
5581902 |
tttgaaaccaaaaaccctgagattcatttaacattcagc |
5581940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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