View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_low_70 (Length: 230)
Name: NF15456_low_70
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_low_70 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 41746067 - 41745857
Alignment:
| Q |
1 |
ccatttgatgatttctttgagtttgattgggcaactcaattttcataccaaagtaatcatttttacatgaatgacttcgatgatcttgaaaatttcaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41746067 |
ccatttgatgatttctttgagtttgattgggcaactcaattttcataccaaagtaatcatttttacatgaatgacttcgatgatcttgaaaatttcaact |
41745968 |
T |
|
| Q |
101 |
ttgatttcaacctcccacaccttgatcagaataattttgaggttgataaaaaacccctcaatgttgtcttgcctgagttggggcattacaatcacaaagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41745967 |
ttgatttcaacctcccacaccttgatcagaataattttgaggttgataaaaaacccctcaatgttgtcttgcctgagttggggcattacaatcacaaagg |
41745868 |
T |
|
| Q |
201 |
tgagactgttg |
211 |
Q |
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||||||||||| |
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| T |
41745867 |
tgagactgttg |
41745857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 29589393 - 29589603
Alignment:
| Q |
1 |
ccatttgatgatttctttgagtttgattgggcaactcaattttcataccaaagtaatcatttttacatgaatgacttcgatgatcttgaaaatttcaact |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
29589393 |
ccatttgatgatttctttgagtttgattgggcaactcaattttcataccgaagtaatcatatttacaagaatgacttcgatgatcttgaaaatttcaact |
29589492 |
T |
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| Q |
101 |
ttgatttcaacctcccacaccttgatcagaataattttgaggttgataaaaaacccctcaatgttgtcttgcctgagttggggcattacaatcacaaagg |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29589493 |
ttaatttcaacctcccacaccttgatcagaataattttgaggttgatcaaaaacccctcaatgttgtcttgcctgagttggggcattacaatcataaagg |
29589592 |
T |
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| Q |
201 |
tgagactgttg |
211 |
Q |
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||||||||||| |
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| T |
29589593 |
tgagactgttg |
29589603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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