View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_low_74 (Length: 218)
Name: NF15456_low_74
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_low_74 |
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Alignment Details
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 30291104 - 30291025
Alignment:
| Q |
123 |
caaattagccaatatatatcatccacacatgtgttaaactgctttcatattttaagaagaagttaaggtgtggggacaat |
202 |
Q |
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| T |
30291104 |
caaattagccaatatatatcatccacacatgtgttaaactgctttcatattttaagaagaagttaaggtgtggggacaat |
30291025 |
T |
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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 30291226 - 30291159
Alignment:
| Q |
1 |
ttggtccggtccacaatcaagtatcaacgtgtgctttattaattttgttgggtagtccttgggtccag |
68 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30291226 |
ttggtccggtccacaatcaagtatcaacgtgtgctttattaattttgttgggtagtccttgggtccag |
30291159 |
T |
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