View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15456_low_9 (Length: 541)
Name: NF15456_low_9
Description: NF15456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15456_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 11 - 524
Target Start/End: Complemental strand, 39083580 - 39083067
Alignment:
| Q |
11 |
aagaatatccaaatcactccttccatttcctaaacaatcaaatccttgttcaacaaaaggacactcagttgcattatacaaaggataaccagatacttga |
110 |
Q |
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| T |
39083580 |
aagaaaatccaaatcactccttccatttcctaaacaatcaaatccttgttcaacaaaaggacactcagttgcattatacaaaggataaccagatacttga |
39083481 |
T |
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| Q |
111 |
acccatgttccatcaaaaacatcacattttctcaacaaggaatcattgttattgttatgatcagaaaagaaaccttgtccattnnnnnnngcatgtgtga |
210 |
Q |
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| T |
39083480 |
acccatgttccatcaaaaacatcacattttctcaacaaggaatcattgttattgttatgatcagaaaagaaaccttgtccattaaaaaaagcatgtgtga |
39083381 |
T |
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| Q |
211 |
tactaggaagaacatagatgtaaccaccaccaattgctataaagaaggaaaaaacagaagcaatgataacaagaacttgaaacctcaaagaaacacatcc |
310 |
Q |
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| T |
39083380 |
tactaggaagaacatagatgtaaccaccaccaattgctataaagaaggaaaaaacagaagcaatgataacaagaacttgaaacctcaaagaaacacatcc |
39083281 |
T |
|
| Q |
311 |
aaagcggttgataattggtttgggactaccaagaggttgagaatgagatcttctgttgaaggaaatgcttttattcaaatgtgaaccactcatgtttgtg |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39083280 |
aaagcggttgataattggtttgggactaccaagaggttgagaatgagatcttctgttgaaggaaatgcttttattcaaatgtgaaccactcatgtttgtg |
39083181 |
T |
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| Q |
411 |
acaaagccatcaccatatgaactagtagcaacaacaaacccttttgaagaaaaacgacatatcaagacaaattcaatgaacccagatgagaaagattcga |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39083180 |
acaaagccatcaccatatgaactagtagcaacaacaaaccctttcgaagaaaaacgacatatcaagacaaattcaatgaacccagatgagaaagattcga |
39083081 |
T |
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| Q |
511 |
ttttggaggaaacc |
524 |
Q |
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| T |
39083080 |
ttttggaggaaacc |
39083067 |
T |
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