View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15457_high_1 (Length: 826)
Name: NF15457_high_1
Description: NF15457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15457_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 732; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 732; E-Value: 0
Query Start/End: Original strand, 1 - 809
Target Start/End: Original strand, 26484152 - 26484975
Alignment:
| Q |
1 |
tatgattataaaagttattccaacgatcatgattgattgatagggtataaacattttagatataacaattttttaatatggtttaatgctaaaattaccg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
26484152 |
tatgattataaaagttattccaacgatcatgattgattgatagtgtaaaaacattttacatataacaattttttaatatggtttaatgctaaaataaccg |
26484251 |
T |
|
| Q |
101 |
ttaataggaggtagaatctgttttaacaatatagatagtttctacaatgaaatcaaataaacatttattttgtgcaatagaatatgatttttcggtttac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
26484252 |
ttaataggaggtagaatctgttttaacaatatagatagtttctacaatgaaatcaaatagacatttattttgtacaatagaatatgatttttcggtttac |
26484351 |
T |
|
| Q |
201 |
tacttggagtttaaagtccaatgtttgtttgttctgttttgtgcaggttagaagggaaaaaataagcgaaaggatgaagtatttgcaagatttagtacca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26484352 |
tacttggagtttaaagtccaatgtttgtttgttctgttttgtgcaggttagaagggaaaaaataagcgaaaggatgaagtatttgcaagatttagtacca |
26484451 |
T |
|
| Q |
301 |
ggatgcaacaaaattgcaggcaaagctggaatgcttgatgaaattattaactatgttcagtctcttcaaagacaagtcgaggttagagttctagtcctgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26484452 |
ggatgcaacaaaattgcaggcaaagctggaatgcttgatgaaattattaactatgttcagtctcttcaaagacaagtcgaggttagagttctagtcctgt |
26484551 |
T |
|
| Q |
401 |
ttgatctatcatgttttagtttataatatggtatctattttaagaa----------------taactgaactgtacattatcaccaaatgcagttcttgt |
484 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26484552 |
ttgatctatcatgttttagtttataatatggtatctattttaagaatagtttcaagtccatctaactgaactgtacattatcaccaaatgcagttcttgt |
26484651 |
T |
|
| Q |
485 |
caatgaaattagcagctgtaaacccaagacttgacttcaacattgatgaattgtttgccaaagaggtaaggacaatgcaagttgtagaaatttaaggttg |
584 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
26484652 |
caatgaaattagcagctgtaaacccaagacttgacttcaacattgatgaattgtttgccaaagaggtaaggacaatgcaagttgtagaaatttaaggctg |
26484751 |
T |
|
| Q |
585 |
tatcagctacatttgaccgtaattaaagcttatgagtcaacatttgaccgcgattatccacagtatcgcgaatcacaacacagccataaattattttaga |
684 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26484752 |
tatcagctacatttgaccgtaattaaagcttatgagtcaacatttgaccgcgattatccacagtatcgcgaatcacaacacagccataaattattttaga |
26484851 |
T |
|
| Q |
685 |
atgcatgctgaaagtgctcctaaattatttcatctttacaggtgtttactcaaaattttcaaatgatgcaatcggaaatgtctaaccctgcatatcttca |
784 |
Q |
| |
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|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26484852 |
atgcatgctg-aagtgctcctaaattatttgatctttacaggtgtttactcaaaattttcaaatgatgcaatcggaaatgtctaaccctgcatatcttca |
26484950 |
T |
|
| Q |
785 |
attcaattcagcacaacaacaagtt |
809 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
26484951 |
attcaattcagcacaacaacaagtt |
26484975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 3e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 242 - 383
Target Start/End: Original strand, 54615979 - 54616120
Alignment:
| Q |
242 |
tgcaggttagaagggaaaaaataagcgaaaggatgaagtatttgcaagatttagtaccaggatgcaacaaaattgcaggcaaagctggaatgcttgatga |
341 |
Q |
| |
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||||||||||||||||||| || || || || |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
54615979 |
tgcaggttagaagggaaaagattagtgagagaatgaagtatttgcaagatttagtaccaggatgcaacaaaattacaggaaaagctggaatgcttgatga |
54616078 |
T |
|
| Q |
342 |
aattattaactatgttcagtctcttcaaagacaagtcgaggt |
383 |
Q |
| |
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||| ||||||||||||||||||||||||| |||||| ||||| |
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| T |
54616079 |
aatcattaactatgttcagtctcttcaaaaacaagttgaggt |
54616120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 473 - 533
Target Start/End: Original strand, 54616190 - 54616250
Alignment:
| Q |
473 |
tgcagttcttgtcaatgaaattagcagctgtaaacccaagacttgacttcaacattgatga |
533 |
Q |
| |
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||||||||||||||||||||||||| |||| || ||||| ||||| ||||| |||||||| |
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| T |
54616190 |
tgcagttcttgtcaatgaaattagctactgtgaatccaaggcttgatttcaatattgatga |
54616250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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