View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15457_high_12 (Length: 265)
Name: NF15457_high_12
Description: NF15457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15457_high_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 26483898 - 26484149
Alignment:
| Q |
14 |
aaagggaaataagaatacaaagttgaaaaatagagaaaattgtgacgatgttggttccaaggaaaattcaaaaggttcagagattcaaaatcataagcct |
113 |
Q |
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| T |
26483898 |
aaagggaaataagaatacaaagttgaaaaatagagaaaattgtgatgatgttggttccaaggaaaattcaaaaggttcagagattcaaaatcataagcct |
26483997 |
T |
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| Q |
114 |
gattacattcatgttcgagcacgtcgtggtcaagctactgatagtcatagcttagctgaaagagtgagtacacaattcttatctttcactatttttctct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26483998 |
gattacattcatgttcgagcacgtcgtggtcaagctactgatagtcatagcttagctgaaagagtgagtacacaattcttatctttcactatttttctct |
26484097 |
T |
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| Q |
214 |
taatttgtcattatttggttaacaaaatgtgattatcaatacactcataata |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26484098 |
taatttgtcattatttggttaacaaaatgtgattatcaatacactcataata |
26484149 |
T |
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Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 112 - 183
Target Start/End: Original strand, 54615828 - 54615899
Alignment:
| Q |
112 |
ctgattacattcatgttcgagcacgtcgtggtcaagctactgatagtcatagcttagctgaaagagtgagta |
183 |
Q |
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| T |
54615828 |
ctgattacattcatgttcgagcacgtcgtggccaagccaccgacagtcatagcttagctgaaagagtaagta |
54615899 |
T |
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