View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15457_high_13 (Length: 249)

Name: NF15457_high_13
Description: NF15457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15457_high_13
NF15457_high_13
[»] scaffold0289 (1 HSPs)
scaffold0289 (1-241)||(18132-18372)
[»] chr7 (9 HSPs)
chr7 (1-241)||(15665264-15665504)
chr7 (1-235)||(15670696-15670930)
chr7 (1-235)||(15677098-15677332)
chr7 (90-208)||(14605787-14605905)
chr7 (90-208)||(16024964-16025082)
chr7 (90-208)||(16172446-16172564)
chr7 (114-203)||(17848425-17848514)
chr7 (10-208)||(16102768-16102967)
chr7 (114-154)||(17826222-17826262)
[»] chr1 (4 HSPs)
chr1 (90-135)||(14522729-14522774)
chr1 (90-135)||(15025079-15025124)
chr1 (90-135)||(15032420-15032465)
chr1 (90-135)||(15040721-15040766)


Alignment Details
Target: scaffold0289 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 18132 - 18372
Alignment:
Q  1 ctaatcatctgatcaaaggaagaggggatattgccagaaaaattgttatgtgaaatattgagtgtttctaagagtatcagctttacaaacattggtggta 100  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  18132 ctaatcatctgatcaaaggaagaagggatattgccagaaagattgttatgtgaaatattcagtgtttctaagagtatcagctttacaaacgttggtggta 18231  T
Q  101 tggttccatccaaaaaattcccactgagatcaagacttcgaagggctttaaattttccaaattcattaggaatatttcctctaaatttgttttgactcaa 200  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  18232 tggttccatccaaaaaatttccactgagatcaagactttgaagggctttaaattttccaaattcattaggaatatttcctctaaatttgttttgacacaa 18331  T
Q  201 atttaagtcgaataacctaggcaaaatgacaagttcatttc 241  Q
    ||||| |||||||| ||||||||||||||||||||| ||||    
T  18332 atttatgtcgaatatcctaggcaaaatgacaagttcttttc 18372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 15665264 - 15665504
Alignment:
Q  1 ctaatcatctgatcaaaggaagaggggatattgccagaaaaattgttatgtgaaatattgagtgtttctaagagtatcagctttacaaacattggtggta 100  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  15665264 ctaatcatctgatcaaaggaagaagggatattgccagaaagattgttatgtgaaatattcagtgtttctaagagtatcagctttacaaacgttggtggta 15665363  T
Q  101 tggttccatccaaaaaattcccactgagatcaagacttcgaagggctttaaattttccaaattcattaggaatatttcctctaaatttgttttgactcaa 200  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  15665364 tggttccatccaaaaaatttccactgagatcaagactttgaagggctttaaattttccaaattcattaggaatatttcctctaaatttgttttgacacaa 15665463  T
Q  201 atttaagtcgaataacctaggcaaaatgacaagttcatttc 241  Q
    ||||| |||||||| ||||||||||||||||||||| ||||    
T  15665464 atttatgtcgaatatcctaggcaaaatgacaagttcttttc 15665504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 15670696 - 15670930
Alignment:
Q  1 ctaatcatctgatcaaaggaagaggggatattgccagaaaaattgttatgtgaaatattgagtgtttctaagagtatcagctttacaaacattggtggta 100  Q
    ||||||||||||||||||||||| ||||| |  ||| ||| |||||||||||||||||| | |||||||||| || |||| ||| ||| |||||||||||    
T  15670696 ctaatcatctgatcaaaggaagaagggatctgtccaaaaagattgttatgtgaaatattcaatgtttctaagcgtttcaggtttccaagcattggtggta 15670795  T
Q  101 tggttccatccaaaaaattcccactgagatcaagacttcgaagggctttaaattttccaaattcattaggaatatttcctctaaatttgttttgactcaa 200  Q
    | | ||||| ||||| ||| ||||||||||||||||||  |||| ||||||||| |||||| |||| ||||||||||||  | ||||| || || |||||    
T  15670796 tagctccattcaaaacatttccactgagatcaagactttcaaggactttaaattgtccaaactcatcaggaatatttccaatgaattttttatggctcaa 15670895  T
Q  201 atttaagtcgaataacctaggcaaaatgacaagtt 235  Q
    | |||  |  |||||||| ||||||||| ||||||    
T  15670896 acttagattcaataacctgggcaaaatggcaagtt 15670930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 15677098 - 15677332
Alignment:
Q  1 ctaatcatctgatcaaaggaagaggggatattgccagaaaaattgttatgtgaaatattgagtgtttctaagagtatcagctttacaaacattggtggta 100  Q
    ||||||||||||||||||||||| |||||    ||| ||| | |||||||||||||||| | |||||||||| || |||| ||| ||| |||||||||||    
T  15677098 ctaatcatctgatcaaaggaagaagggatcagtccaaaaagaatgttatgtgaaatattcaatgtttctaagcgtttcaggtttccaagcattggtggta 15677197  T
Q  101 tggttccatccaaaaaattcccactgagatcaagacttcgaagggctttaaattttccaaattcattaggaatatttcctctaaatttgttttgactcaa 200  Q
    ||| ||| | ||||| ||| ||||||||||||||||||  |||| ||||||||| |||||| |||  ||||||||||||  | |||||||| || |||||    
T  15677198 tggctcctttcaaaacatttccactgagatcaagactttcaaggactttaaattgtccaaactcaaaaggaatatttccaatgaatttgttatggctcaa 15677297  T
Q  201 atttaagtcgaataacctaggcaaaatgacaagtt 235  Q
    | ||| || ||||||||| ||||||||| ||||||    
T  15677298 acttaggttgaataacctgggcaaaatggcaagtt 15677332  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 14605905 - 14605787
Alignment:
Q  90 cattggtggtatggttccatccaaaaaattcccactgagatcaagacttcgaagggctttaaattttccaaattcattaggaatatttcctctaaatttg 189  Q
    ||||| |||||| ||||||||||||||||| ||||||||||| ||  ||  |||| | ||||||| |||||||||| |||||||||||||| | ||||||    
T  14605905 cattgatggtattgttccatccaaaaaatttccactgagatctaggatttcaaggacattaaattgtccaaattcaataggaatatttcctgtgaatttg 14605806  T
Q  190 ttttgactcaaatttaagt 208  Q
    || || |||||||||||||    
T  14605805 ttatggctcaaatttaagt 14605787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 16025082 - 16024964
Alignment:
Q  90 cattggtggtatggttccatccaaaaaattcccactgagatcaagacttcgaagggctttaaattttccaaattcattaggaatatttcctctaaatttg 189  Q
    ||||| |||||| ||||||||||||||||| ||||||||||| ||  ||  |||| | ||||||| |||||||||| |||||||||||||| | ||||||    
T  16025082 cattgatggtattgttccatccaaaaaatttccactgagatctaggatttcaaggacattaaattgtccaaattcaataggaatatttcctgtgaatttg 16024983  T
Q  190 ttttgactcaaatttaagt 208  Q
    || || |||||||||||||    
T  16024982 ttatggctcaaatttaagt 16024964  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 16172564 - 16172446
Alignment:
Q  90 cattggtggtatggttccatccaaaaaattcccactgagatcaagacttcgaagggctttaaattttccaaattcattaggaatatttcctctaaatttg 189  Q
    ||||| |||||| |||||||  |||||||| ||||| |||||||| ||| |||||  |||||||| ||| ||||||  ||||||||||||| | ||||||    
T  16172564 cattgatggtattgttccatttaaaaaatttccactcagatcaaggctttgaaggattttaaattgtcccaattcaacaggaatatttcctatcaatttg 16172465  T
Q  190 ttttgactcaaatttaagt 208  Q
    || || |||||||||||||    
T  16172464 ttatggctcaaatttaagt 16172446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 203
Target Start/End: Complemental strand, 17848514 - 17848425
Alignment:
Q  114 aaaattcccactgagatcaagacttcgaagggctttaaattttccaaattcattaggaatatttcctctaaatttgttttgactcaaatt 203  Q
    |||||||||||| |||||||||||| ||||| |||||||||  ||||| |||  ||||||||||||| |||||||||| || ||||||||    
T  17848514 aaaattcccactaagatcaagactttgaaggactttaaattggccaaactcaacaggaatatttcctttaaatttgttatggctcaaatt 17848425  T

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Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 208
Target Start/End: Complemental strand, 16102967 - 16102768
Alignment:
Q  10 tgatcaaaggaagaggggatattgccagaaaaattgttatgtgaaatattgagtgtttctaagagtatcagctttacaaacattggtggtatggttccat 109  Q
    |||||||||  |||||| |||  |||||||| ||| |||||||| ||||| | |||||| |||  | ||| || |  || ||||| |||||| |||||||    
T  16102967 tgatcaaagctagagggaataaagccagaaagattattatgtgagatattcaatgtttccaagtatttcaactgtgtaagcattgatggtattgttccat 16102868  T
Q  110 ccaaaaaa-ttcccactgagatcaagacttcgaagggctttaaattttccaaattcattaggaatatttcctctaaatttgttttgactcaaatttaagt 208  Q
      |||||| || ||||| |||||||| ||| |||||  |||||||| ||| ||||||  ||||||||||||| | |||||||| || |||||||||||||    
T  16102867 ttaaaaaaatttccactcagatcaaggctttgaaggattttaaattgtcccaattcaacaggaatatttcctatcaatttgttatggctcaaatttaagt 16102768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 17826222 - 17826262
Alignment:
Q  114 aaaattcccactgagatcaagacttcgaagggctttaaatt 154  Q
    |||||||||||| |||||||||||| ||||| |||||||||    
T  17826222 aaaattcccactaagatcaagactttgaaggactttaaatt 17826262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 14522729 - 14522774
Alignment:
Q  90 cattggtggtatggttccatccaaaaaattcccactgagatcaaga 135  Q
    ||||| |||||||||||||| |||||||||||| || |||||||||    
T  14522729 cattgttggtatggttccattcaaaaaattcccgctaagatcaaga 14522774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 15025124 - 15025079
Alignment:
Q  90 cattggtggtatggttccatccaaaaaattcccactgagatcaaga 135  Q
    ||||| |||||||||||||| || |||||||||||| |||||||||    
T  15025124 cattgatggtatggttccattcataaaattcccactaagatcaaga 15025079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 15032465 - 15032420
Alignment:
Q  90 cattggtggtatggttccatccaaaaaattcccactgagatcaaga 135  Q
    ||||| |||||||||||||| || |||||||||||| |||||||||    
T  15032465 cattgatggtatggttccattcataaaattcccactaagatcaaga 15032420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 15040766 - 15040721
Alignment:
Q  90 cattggtggtatggttccatccaaaaaattcccactgagatcaaga 135  Q
    ||||| |||||||||||||| |||| |||||||||| |||||||||    
T  15040766 cattgttggtatggttccattcaaagaattcccactaagatcaaga 15040721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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