View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15457_high_14 (Length: 246)
Name: NF15457_high_14
Description: NF15457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15457_high_14 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: scaffold0391 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 7288 - 7531
Alignment:
| Q |
1 |
cgtataaacattttagttgtgctagctattaacaaagcaaagacacgttaaaaccgaaacacaaaaccaaaggtaactttctaacacttttcatgttcta |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7288 |
cgtataaacatttcagttgtgctagctattaacaaagcaaagacacgttaaaaccgaaacacaaaaccaaaggtaactttcaaacacttttcatgttcta |
7387 |
T |
|
| Q |
101 |
gattttcaattttaagggttttgtttatgattttaatatatacttcttatgatannnnnnnnnnnggctgtattcgatcttggcttttatttagtttaat |
200 |
Q |
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| T |
7388 |
gattttcaattttaagggttttatttatgattttaatatatacttcttatgataaatttttttttggctgtattcgatcttggcttttatttagtttaat |
7487 |
T |
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| Q |
201 |
taagtttatgtaacaatttggtcatatttaattagaataatcta |
244 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7488 |
taagtttatgtaacaatttggtcatatttaattaggataatcta |
7531 |
T |
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Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 34116777 - 34116914
Alignment:
| Q |
5 |
taaacattttagttgtgctagctattaacaaagcaaagacacgttaaaaccgaaacacaaaaccaaaggtaactttctaacacttttcatgttctagatt |
104 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34116777 |
taaacatttcagttgtgctagctattaacaaagcaaagacacgttaaaactgaaacacaaaaccaaaggtaactttctaacacttttcatgttctaaatt |
34116876 |
T |
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| Q |
105 |
ttcaattttaagg--gttttgtttatgattttaatata |
140 |
Q |
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| T |
34116877 |
ttcaatttgatgggtgttttatttatgattttaatata |
34116914 |
T |
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